RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA385064", tax_kingdom = "Pseudomonadati" and tax_phylum = "Myxococcota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Myxococcota · 2 ✖

tax_kingdom 1

  • Pseudomonadati · 2 ✖

bioproject 1

  • PRJNA385064 · 2 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
12554535 12554535 PRJNA385064_P_NODE_4710_length_198_cov_0.865772_g4585_i0 PRJNA385064 4710 198 0.865772 1.71422856 Myxococcales 29 Bacteria Bacteria 265 2.03e-66   NTclustered gi|2869653495|gb|CP175551.1| 33 g4585 i0 93.296 247.545454545455 179 12 90 0 15 193 3323 3145 Myxococcus fulvus strain KYC1117 chromosome, complete genome blastn 49014 265 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales Myxococcaceae Myxococcus Myxococcus fulvus
30738594 30738594 PRJNA385064_P_NODE_694_length_611_cov_2.302491_g579_i0 PRJNA385064 694 611 2.302491 14.06822001 Polyangia bacterium 3058050 Bacteria Bacteria 47.8 0.0158   NR HVX98075.1 3058050 g579 i0 28 1.27168576104746 132 90 62.4 1 46 426 124 255 HVX98075.1 ammonium transporter [Polyangia bacterium] diamond 777 47.8 1 Bacteria   Pseudomonadati Myxococcota         Polyangia bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;