RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA385064", tax_kingdom = "Pseudomonadati" and tax_phylum = "Campylobacterota"

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tax_superkingdom 1

tax_phylum 1

  • Campylobacterota · 2 ✖

tax_kingdom 1

  • Pseudomonadati · 2 ✖

bioproject 1

  • PRJNA385064 · 2 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
18256885 18256885 PRJNA385064_P_NODE_235_length_1100_cov_50.764034_g169_i0 PRJNA385064 235 1100 50.764034 558.404374 Campylobacter showae 204 Bacteria Bacteria 1578 0   NTclustered gi|1483583511|emb|LT631435.1| 204 g169 i0 92.864 233.283636363636 1093 69 99 8 11 1100 10013 11099 Campylobacter showae genome assembly, plasmid: XI blastn 256612 1578 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Campylobacteraceae Campylobacter Campylobacter showae
19531220 19531220 PRJNA385064_P_NODE_516_length_716_cov_5.590705_g413_i0 PRJNA385064 516 716 5.590705 40.0294478 Campylobacter showae 204 Bacteria Bacteria 1312 0   NTclustered gi|1483583529|emb|LT631453.1| 204 g413 i0 99.721 238.406424581006 716 2 100 0 1 716 389780 389065 Campylobacter showae strain B91_SCBr genome assembly, chromosome: I blastn 170699 1312 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Campylobacteraceae Campylobacter Campylobacter showae

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;