RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA385064", tax_kingdom = "Pseudomonadati" and tax_phylum = "Aquificota"

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tax_superkingdom 1

tax_phylum 1

  • Aquificota · 2 ✖

tax_kingdom 1

  • Pseudomonadati · 2 ✖

bioproject 1

  • PRJNA385064 · 2 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
11279087 11279087 PRJNA385064_P_NODE_6229_length_170_cov_1.264463_g6104_i0 PRJNA385064 6229 170 1.264463 2.1495871 Sulfurihydrogenibium 212790 Bacteria Bacteria 278 2.15e-70   NTclustered gi|225643049|gb|CP001229.1| 204536 g6104 i0 96.45 105.341176470588 169 5 99 1 2 170 829078 828911 Sulfurihydrogenibium azorense Az-Fu1, complete genome blastn 17908 278 1 Bacteria   Pseudomonadati Aquificota Aquificia Aquificales Hydrogenothermaceae Sulfurihydrogenibium Sulfurihydrogenibium azorense
25302065 25302065 PRJNA385064_P_NODE_4140_length_213_cov_1.243902_g4015_i0 PRJNA385064 4140 213 1.243902 2.64951126 Sulfurihydrogenibium 212790 Bacteria Bacteria 377 2.72e-100   NTclustered gi|225643049|gb|CP001229.1| 204536 g4015 i0 98.592 210.192488262911 213 3 100 0 1 213 829875 829663 Sulfurihydrogenibium azorense Az-Fu1, complete genome blastn 44771 377 1 Bacteria   Pseudomonadati Aquificota Aquificia Aquificales Hydrogenothermaceae Sulfurihydrogenibium Sulfurihydrogenibium azorense

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;