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contig_metadata

10 rows where bioproject = "PRJNA385064" and tax_clade = "PVC group"

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analysis 2

tax_superkingdom 1

tax_kingdom 1

tax_clade 1

  • PVC group · 10 ✖

bioproject 1

  • PRJNA385064 · 10 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
405379 405379 PRJNA385064_P_NODE_4981_length_192_cov_1.363636_g4856_i0 PRJNA385064 4981 192 1.363636 2.61818112 Paludisphaera borealis 1387353 Bacteria Bacteria 322 1.14e-83   NTclustered gi|1133581311|gb|CP019082.1| 1387353 g4856 i0 96.875 125.505208333333 192 6 100 0 1 192 122449 122640 Paludisphaera borealis strain PX4 chromosome, complete genome blastn 24097 322 1 Bacteria PVC group Pseudomonadati Planctomycetota Planctomycetia Isosphaerales Isosphaeraceae Paludisphaera Paludisphaera borealis
405381 405381 PRJNA385064_P_NODE_5161_length_188_cov_1.345324_g5036_i0 PRJNA385064 5161 188 1.345324 2.52920912 uncultured Chlamydiales bacterium 174324 Bacteria Bacteria 237 4.14e-58   NTclustered gi|880804258|gb|KT263002.1| 174324 g5036 i0 92.216 130.686170212766 167 13 89 0 22 188 1 167 Uncultured Chlamydiales bacterium clone SW41C 16S ribosomal RNA gene, partial sequence blastn 24569 237 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Chlamydiales     uncultured Chlamydiales bacterium
7453874 7453874 PRJNA385064_P_NODE_3866_length_221_cov_1.418605_g3741_i0 PRJNA385064 3866 221 1.418605 3.13511705 Pirellulaceae 2691357 Bacteria Bacteria 243 1.08e-59   NTclustered gi|1015448679|gb|CP011272.1| 1632865 g3741 i0 87.215 470.597285067873 219 21 98 5 3 218 3094893 3095107 Pirellula sp. SH-Sr6A, complete genome blastn 104002 244 0.995901639344262 Bacteria PVC group Pseudomonadati Planctomycetota Planctomycetia Pirellulales Pirellulaceae Pirellula Pirellula sp. SH-Sr6A
8728564 8728564 PRJNA385064_P_NODE_4707_length_198_cov_1.000000_g4582_i0 PRJNA385064 4707 198 1 1.98 Planctomycetia 203683 Bacteria Bacteria 254 4.38e-63   NTclustered gi|2874254106|emb|OY970189.1| 100233 g4582 i0 89.899 117.469696969697 198 19 100 1 1 198 4318508 4318312 MAG: uncultured Planctomycetaceae bacterium isolate MFD09603.bin.2.127 genome assembly, chromosome: 1 blastn 23259 254 1 Bacteria PVC group Pseudomonadati Planctomycetota Planctomycetia Planctomycetales Planctomycetaceae   uncultured Planctomycetaceae bacterium
13159096 13159096 PRJNA385064_P_NODE_6171_length_171_cov_0.860656_g6046_i0 PRJNA385064 6171 171 0.860656 1.47172176 Paludisphaera borealis 1387353 Bacteria Bacteria 239 1.02e-58   NTclustered gi|1133581311|gb|CP019082.1| 1387353 g6046 i0 95.918 95.2748538011696 147 6 86 0 23 169 122120 121974 Paludisphaera borealis strain PX4 chromosome, complete genome blastn 16292 239 1 Bacteria PVC group Pseudomonadati Planctomycetota Planctomycetia Isosphaerales Isosphaeraceae Paludisphaera Paludisphaera borealis
18256886 18256886 PRJNA385064_P_NODE_3035_length_252_cov_1.768473_g2910_i0 PRJNA385064 3035 252 1.768473 4.45655196 uncultured Pirellula sp. 298571 Bacteria Bacteria 466 6.89e-127   NTclustered gi|511202468|gb|KC994699.1| 298571 g2910 i0 100 98.7619047619048 252 0 100 0 1 252 1406 1155 Uncultured Pirellula sp. clone BF 019 16S ribosomal RNA gene, partial sequence blastn 24888 466 1 Bacteria PVC group Pseudomonadati Planctomycetota Planctomycetia Pirellulales Pirellulaceae Pirellula uncultured Pirellula sp.
18256906 18256906 PRJNA385064_P_NODE_7915_length_162_cov_0.902655_g7790_i0 PRJNA385064 7915 162 0.902655 1.4623011 uncultured Verrucomicrobiae bacterium 412056 Bacteria Bacteria 159 7.72e-35   NTclustered gi|2874254065|emb|OY970130.1| 412056 g7790 i0 84.756 1.97530864197531 164 19 100 6 1 162 1683040 1683199 MAG: uncultured Verrucomicrobiae bacterium isolate MFD05705.bin.c.1 genome assembly, chromosome: 1 blastn 320 159 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia       uncultured Verrucomicrobiae bacterium
29885778 29885778 PRJNA385064_P_NODE_4031_length_216_cov_1.161677_g3906_i0 PRJNA385064 4031 216 1.161677 2.50922232 Planctomycetota bacterium 2026780 Bacteria Bacteria 44.7 0.00574   NR GDY12475.1 2026780 g3906 i0 44.9 0.680555555555556 49 23 68.1 1 61 207 659 703 GDY12475.1 hypothetical protein LBMAG53_13530 [Planctomycetota bacterium] diamond 147 44.7 1 Bacteria PVC group Pseudomonadati Planctomycetota         Planctomycetota bacterium
32130167 32130167 PRJNA385064_P_NODE_6838_length_166_cov_0.871795_g6713_i0 PRJNA385064 6838 166 0.871795 1.4471797 Phycisphaerae bacterium 2026778 Bacteria Bacteria 90.1 1.56e-19   NR MBP7933803.1 2026778 g6713 i0 69.1 4.96987951807229 55 17 99.4 0 165 1 132 186 MBP7933803.1 exo-alpha-sialidase [Phycisphaerae bacterium] diamond 825 90.1 1 Bacteria PVC group Pseudomonadati Planctomycetota Phycisphaerae       Phycisphaerae bacterium
32146926 32146926 PRJNA385064_P_NODE_7238_length_164_cov_0.886957_g7113_i0 PRJNA385064 7238 164 0.886957 1.45460948 Planctomycetia 203683 Bacteria Bacteria 95.9 3.0800000000000003e-22   NR MBV8486726.1 2026779 g7113 i0 87 1.95731707317073 54 7 98.8 0 163 2 37 90 MBV8486726.1 adenosylcobinamide-GDP ribazoletransferase [Planctomycetaceae bacterium] diamond 321 95.9 1 Bacteria PVC group Pseudomonadati Planctomycetota Planctomycetia Planctomycetales Planctomycetaceae   Planctomycetaceae bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;