RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA385064", tax_clade = "Opisthokonta" and tax_phylum = "Annelida"

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tax_superkingdom 1

tax_phylum 1

  • Annelida · 3 ✖

tax_kingdom 1

tax_clade 1

  • Opisthokonta · 3 ✖

bioproject 1

  • PRJNA385064 · 3 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3626612 3626612 PRJNA385064_P_NODE_2243_length_304_cov_1.349020_g2118_i0 PRJNA385064 2243 304 1.34902 4.1010208 Clitellata 42113 Annelida Annelida 551 2.289999999999999e-152   NTclustered gi|342220100|gb|HQ691211.1| 6398 g2118 i0 99.342 133 304 2 100 0 1 304 34 337 Lumbricus terrestris 18S ribosomal RNA gene, partial sequence blastn 40432 556 0.991007194244604 Eukaryota Opisthokonta Metazoa Annelida Clitellata Crassiclitellata Lumbricidae Lumbricus Lumbricus terrestris
7453881 7453881 PRJNA385064_P_NODE_6946_length_165_cov_1.741379_g6821_i0 PRJNA385064 6946 165 1.741379 2.87327535 Aporrectodea 27388 Annelida Annelida 305 9.59e-79   NTclustered gi|238818137|gb|FJ967485.1| 302032 g6821 i0 100 100 165 0 100 0 1 165 398 562 Aporrectodea caliginosa isolate MPL138 28S ribosomal RNA gene, partial sequence blastn 16500 305 1 Eukaryota Opisthokonta Metazoa Annelida Clitellata Crassiclitellata Lumbricidae Aporrectodea Aporrectodea caliginosa
16378385 16378385 PRJNA385064_P_NODE_5273_length_186_cov_1.569343_g5148_i0 PRJNA385064 5273 186 1.569343 2.91897798 Lumbricidae 6392 Annelida Annelida 339 1.0899999999999998e-88   NTclustered gi|11494215|gb|AF212166.1|AF212166 6396 g5148 i0 99.462 129.58064516129 186 1 100 0 1 186 2651 2836 Eisenia fetida 28S ribosomal RNA gene, partial sequence blastn 24102 339 1 Eukaryota Opisthokonta Metazoa Annelida Clitellata Crassiclitellata Lumbricidae Eisenia Eisenia fetida

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;