RNAquarium Metadata Server
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contig_metadata

9 rows where bioproject = "PRJNA384462" and tax_phylum = "Tubulinea"

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tax_superkingdom 1

tax_phylum 1

  • Tubulinea · 9 ✖

tax_clade 1

bioproject 1

  • PRJNA384462 · 9 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
405364 405364 PRJNA384462_S_NODE_8161_length_198_cov_1.885906_g8045_i0 PRJNA384462 8161 198 1.885906 3.73409388 Vermamoeba vermiformis 5778 Tubulinea other_Eukaryota 366 5.4e-97   NTclustered gi|909719645|gb|KT185625.1| 5778 g8045 i0 100 83.530303030303 198 0 100 0 1 198 4673 4870 Vermamoeba vermiformis isolate 1 18S ribosomal RNA gene, internal transcribed spacer 1, 5.8S ribosomal RNA gene, internal transcribed spacer 2, and 28S ribosomal RNA gene, complete sequence blastn 16539 366 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
6178807 6178807 PRJNA384462_S_NODE_11485_length_174_cov_2.480000_g11369_i0 PRJNA384462 11485 174 2.48 4.3152 Vermamoeba 1260114 Tubulinea other_Eukaryota 320 3.63e-83   NTclustered gi|300078496|gb|GU001158.1| 5778 g11369 i0 100 5.28735632183908 173 0 99 0 2 174 1620 1448 Hartmannella vermiformis 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 920 320 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
7453862 7453862 PRJNA384462_S_NODE_6806_length_212_cov_3.349693_g6690_i0 PRJNA384462 6806 212 3.349693 7.10134916 Vermamoeba 1260114 Tubulinea other_Eukaryota 370 4.53e-98   NTclustered gi|909719645|gb|KT185625.1| 5778 g6690 i0 98.113 92.5754716981132 212 4 100 0 1 212 4899 5110 Vermamoeba vermiformis isolate 1 18S ribosomal RNA gene, internal transcribed spacer 1, 5.8S ribosomal RNA gene, internal transcribed spacer 2, and 28S ribosomal RNA gene, complete sequence blastn 19626 370 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
15103683 15103683 PRJNA384462_S_NODE_8132_length_198_cov_3.711409_g8016_i0 PRJNA384462 8132 198 3.711409 7.34858982 Vermamoeba 1260114 Tubulinea other_Eukaryota 350 5.44e-92   NTclustered gi|909719645|gb|KT185625.1| 5778 g8016 i0 98.485 3 198 3 100 0 1 198 5137 5334 Vermamoeba vermiformis isolate 1 18S ribosomal RNA gene, internal transcribed spacer 1, 5.8S ribosomal RNA gene, internal transcribed spacer 2, and 28S ribosomal RNA gene, complete sequence blastn 594 350 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
15708032 15708032 PRJNA384462_S_NODE_10133_length_182_cov_8.676692_g10017_i0 PRJNA384462 10133 182 8.676692 15.79157944 Paraflabellula hoguae 136459 Tubulinea other_Eukaryota 115 1.95e-21   NTclustered gi|145386791|gb|EF216916.1| 136459 g10017 i0 92.5 41.8296703296703 80 6 62 0 99 178 1498 1419 Paraflabellula hoguae 28S large subunit ribosomal RNA gene, partial sequence blastn 7613 115 1 Eukaryota Amoebozoa   Tubulinea Elardia Leptomyxida Flabellulidae Paraflabellula Paraflabellula hoguae
17653457 17653457 PRJNA384462_S_NODE_7474_length_205_cov_1.814103_g7358_i0 PRJNA384462 7474 205 1.814103 3.71891115 Vermamoeba 1260114 Tubulinea other_Eukaryota 374 3.3599999999999997e-99   NTclustered gi|300078496|gb|GU001158.1| 5778 g7358 i0 99.512 44.1219512195122 205 1 100 0 1 205 2700 2904 Hartmannella vermiformis 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 9045 374 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
20202010 20202010 PRJNA384462_S_NODE_4576_length_249_cov_2.445000_g4460_i0 PRJNA384462 4576 249 2.445 6.08805 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 449 6.840000000000001e-122   NTclustered gi|909719645|gb|KT185625.1| 5778 g4460 i0 99.197 40.2168674698795 249 2 100 0 1 249 3619 3867 Vermamoeba vermiformis isolate 1 18S ribosomal RNA gene, internal transcribed spacer 1, 5.8S ribosomal RNA gene, internal transcribed spacer 2, and 28S ribosomal RNA gene, complete sequence blastn 10014 449 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
22081785 22081785 PRJNA384462_S_NODE_6738_length_213_cov_1.890244_g6622_i0 PRJNA384462 6738 213 1.890244 4.02621972 Vermamoeba vermiformis 5778 Tubulinea other_Eukaryota 388 1.26e-103   NTclustered gi|300078496|gb|GU001158.1| 5778 g6622 i0 99.531 2 213 1 100 0 1 213 3438 3650 Hartmannella vermiformis 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 426 388 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
23357383 23357383 PRJNA384462_S_NODE_3479_length_280_cov_2.809524_g3363_i0 PRJNA384462 3479 280 2.809524 7.8666672 Vermamoeba vermiformis 5778 Tubulinea other_Eukaryota 481 2.78e-131   NTclustered gi|909719645|gb|KT185625.1| 5778 g3363 i0 97.842 1.79642857142857 278 6 99 0 2 279 7097 6820 Vermamoeba vermiformis isolate 1 18S ribosomal RNA gene, internal transcribed spacer 1, 5.8S ribosomal RNA gene, internal transcribed spacer 2, and 28S ribosomal RNA gene, complete sequence blastn 503 481 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;