RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

9 rows where bioproject = "PRJNA384462", tax_phylum = "Bdellovibrionota" and tax_superkingdom = "Bacteria"

✎ View and edit SQL

This data as json, CSV (advanced)

analysis 2

tax_superkingdom 1

  • Bacteria · 9 ✖

tax_phylum 1

  • Bdellovibrionota · 9 ✖

tax_kingdom 1

bioproject 1

  • PRJNA384462 · 9 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1680134 1680134 PRJNA384462_S_NODE_10202_length_182_cov_1.533835_g10086_i0 PRJNA384462 10202 182 1.533835 2.7915797 Peredibacter sp. HCB2-198 3383025 Bacteria Bacteria 270 3.93e-68   NTclustered gi|2867657404|gb|CP174607.1| 3383025 g10086 i0 93.407 38.8571428571429 182 12 100 0 1 182 1292529 1292348 Peredibacter sp. HCB2-198 chromosome, complete genome blastn 7072 270 1 Bacteria   Pseudomonadati Bdellovibrionota Bacteriovoracia Bacteriovoracales Bacteriovoracaceae Peredibacter Peredibacter sp. HCB2-198
2956040 2956040 PRJNA384462_S_NODE_9163_length_190_cov_1.063830_g9047_i0 PRJNA384462 9163 190 1.06383 2.021277 uncultured Pseudobdellovibrionaceae bacterium 269677 Bacteria Bacteria 313 6.78e-81   NTclustered gi|2237331304|emb|OW746704.1| 269677 g9047 i0 96.316 99.8315789473684 190 7 100 0 1 190 231 42 uncultured Bdellovibrionaceae bacterium DNA containing 16S-23S intergenic spacer region, clone 43 blastn 18968 313 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae   uncultured Pseudobdellovibrionaceae bacterium
18927361 18927361 PRJNA384462_S_NODE_15075_length_162_cov_0.893805_g14959_i0 PRJNA384462 15075 162 0.893805 1.4479641 Micavibrio sp. 2024841 Bacteria Bacteria 67.8 1.78e-11   NR TVQ84352.1 2024841 g14959 i0 64.2 1.96296296296296 53 19 98.1 0 2 160 325 377 TVQ84352.1 MAG: electron transfer flavoprotein-ubiquinone oxidoreductase [Micavibrio sp.] diamond 318 67.8 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae Micavibrio Micavibrio sp.
27106611 27106611 PRJNA384462_S_NODE_8522_length_195_cov_1.397260_g8406_i0 PRJNA384462 8522 195 1.39726 2.724657 Bdellovibrionales bacterium 2053517 Bacteria Bacteria 111 5.2900000000000005e-27   NR MCB0368368.1 2053517 g8406 i0 88.9 0.969230769230769 63 7 96.9 0 191 3 126 188 MCB0368368.1 hypothetical protein [Bdellovibrionales bacterium] diamond 189 111 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales     Bdellovibrionales bacterium
27296420 27296420 PRJNA384462_S_NODE_14963_length_162_cov_0.902655_g14847_i0 PRJNA384462 14963 162 0.902655 1.4623011 Bacteriovoracaceae bacterium 2081706 Bacteria Bacteria 65.5 1.22e-10   NR MFT6631004.1 2081706 g14847 i0 60.4 0.888888888888889 48 19 88.9 0 162 19 830 877 MFT6631004.1 alpha-tubulin suppressor-like RCC1 family protein [Bacteriovoracaceae bacterium] diamond 144 65.5 1 Bacteria   Pseudomonadati Bdellovibrionota Bacteriovoracia Bacteriovoracales Bacteriovoracaceae   Bacteriovoracaceae bacterium
29001935 29001935 PRJNA384462_S_NODE_1808_length_387_cov_2.701183_g1692_i0 PRJNA384462 1808 387 2.701183 10.45357821 Bdellovibrio sp. 28201 Bacteria Bacteria 121 4.65e-29   NR MBI2521824.1 28201 g1692 i0 53.2 0.961240310077519 124 52 93 2 25 384 947 1068 MBI2521824.1 hypothetical protein [Bdellovibrio sp.] diamond 372 121 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae Bdellovibrio Bdellovibrio sp.
31718692 31718692 PRJNA384462_S_NODE_10897_length_178_cov_1.186047_g10781_i0 PRJNA384462 10897 178 1.186047 2.11116366 Bdellovibrionales bacterium 2053517 Bacteria Bacteria 79.7 1.87e-17   NR MCB0370576.1 2053517 g10781 i0 70.7 0.97752808988764 58 17 97.8 0 176 3 49 106 MCB0370576.1 hypothetical protein [Bdellovibrionales bacterium] diamond 174 79.7 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales     Bdellovibrionales bacterium
32256902 32256902 PRJNA384462_S_NODE_7878_length_201_cov_1.006579_g7762_i0 PRJNA384462 7878 201 1.006579 2.02322379 Bacteriovoracaceae bacterium 2081706 Bacteria Bacteria 107 1.85e-27   NR MBP9675022.1 2081706 g7762 i0 94.5 0.82089552238806 55 3 82.1 0 200 36 58 112 MBP9675022.1 EF-hand domain-containing protein [Bacteriovoracaceae bacterium] diamond 165 107 1 Bacteria   Pseudomonadati Bdellovibrionota Bacteriovoracia Bacteriovoracales Bacteriovoracaceae   Bacteriovoracaceae bacterium
32288523 32288523 PRJNA384462_S_NODE_919_length_534_cov_2.775258_g806_i0 PRJNA384462 919 534 2.775258 14.81987772 Bdellovibrionia bacterium 3034169 Bacteria Bacteria 79 1.61e-13   NR MEQ1876897.1 3034169 g806 i0 52.3 0.48314606741573 86 36 48.3 2 1 258 241 321 MEQ1876897.1 hypothetical protein [Bdellovibrionia bacterium] diamond 258 79 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia       Bdellovibrionia bacterium

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;