RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA384462", tax_kingdom = "Pseudomonadati" and tax_phylum = "Campylobacterota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Campylobacterota · 2 ✖

tax_kingdom 1

  • Pseudomonadati · 2 ✖

bioproject 1

  • PRJNA384462 · 2 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
15103635 15103635 PRJNA384462_S_NODE_11032_length_177_cov_1.367188_g10916_i0 PRJNA384462 11032 177 1.367188 2.41992276 root 1 Root_unresolved Root_unresolved 71.3 4.13e-8   NTclustered gi|2642431232|gb|CP078474.1| 210 g10916 i0 97.561 20.2316384180791 41 1 23 0 129 169 5403 5443 Helicobacter pylori strain HpGP-NGA-006 chromosome, complete genome blastn 3581 71.3 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori
32761816 32761816 PRJNA384462_S_NODE_7500_length_205_cov_1.108974_g7384_i0 PRJNA384462 7500 205 1.108974 2.2733967 Helicobacter pylori 210 Bacteria Bacteria 112 9.229999999999998e-31   NR GAA8683247.1 210 g7384 i0 98.5 0.951219512195122 65 1 95.1 0 1 195 21 85 GAA8683247.1 hypothetical protein Kyoto145A_0510 [Helicobacter pylori] diamond 195 112 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;