RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA384462", tax_clade = "PVC group" and tax_phylum = "Verrucomicrobiota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Verrucomicrobiota · 3 ✖

tax_kingdom 1

tax_clade 1

  • PVC group · 3 ✖

bioproject 1

  • PRJNA384462 · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
5509004 5509004 PRJNA384462_S_NODE_13385_length_166_cov_0.871795_g13269_i0 PRJNA384462 13385 166 0.871795 1.4471797 uncultured Verrucomicrobiae bacterium 412056 Bacteria Bacteria 279 5.86e-71   NTclustered gi|2874254040|emb|OY970364.1| 412056 g13269 i0 96.988 1 166 5 100 0 1 166 227977 227812 MAG: uncultured Verrucomicrobiae bacterium isolate MFD04463.bin.c.15 genome assembly, chromosome: 1 blastn 166 279 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia       uncultured Verrucomicrobiae bacterium
8728511 8728511 PRJNA384462_S_NODE_15427_length_161_cov_0.910714_g15311_i0 PRJNA384462 15427 161 0.910714 1.46624954 Fontisphaera 3050007 Bacteria Bacteria 254 3.42e-63   NTclustered gi|2874253779|emb|OY969763.1| 412056 g15311 i0 95.031 121.633540372671 161 8 100 0 1 161 3832570 3832410 MAG: uncultured Verrucomicrobiae bacterium isolate MFD04967.bin.c.2 genome assembly, chromosome: 1 blastn 19583 255 0.996078431372549 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia       uncultured Verrucomicrobiae bacterium
32856191 32856191 PRJNA384462_S_NODE_14640_length_163_cov_0.885965_g14524_i0 PRJNA384462 14640 163 0.885965 1.44412295 Verrucomicrobiaceae bacterium 2026800 Bacteria Bacteria 50.4 2.37e-5   NR RYD65414.1 2026800 g14524 i0 90.9 0.404907975460123 22 2 40.5 0 163 98 313 334 RYD65414.1 MAG: hypothetical protein EOP84_31955 [Verrucomicrobiaceae bacterium] diamond 66 50.4 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Verrucomicrobiaceae   Verrucomicrobiaceae bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;