RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA384462", tax_clade = "Metamonada" and tax_phylum = "Parabasalia"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Parabasalia · 3 ✖

tax_clade 1

  • Metamonada · 3 ✖

bioproject 1

  • PRJNA384462 · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
405362 405362 PRJNA384462_S_NODE_781_length_575_cov_8.912548_g677_i0 PRJNA384462 781 575 8.912548 51.247151 Trichomonas vaginalis 5722 Parabasalia other_Eukaryota 65.8 7.29e-6   NTclustered gi|2319615616|ref|XR_007835995.1| 412133 g677 i0 90.385 0.330434782608696 52 2 9 3 110 160 2561 2610 Trichomonas vaginalis G3 23S ribosomal RNA (TVAGG3_0034210), rRNA blastn 190 65.8 1 Eukaryota Metamonada   Parabasalia   Trichomonadida Trichomonadidae Trichomonas Trichomonas vaginalis
29712663 29712663 PRJNA384462_S_NODE_2990_length_301_cov_0.992063_g2874_i0 PRJNA384462 2990 301 0.992063 2.98610963 Viridiplantae 33090 Parabasalia other_Eukaryota 118 7.12e-31   NR XP_067774515.1 135588 g2874 i0 53 4.96345514950166 100 46 99.7 1 301 2 52 150 XP_067774515.1 Ras-related protein RABD1 [Histomonas meleagridis] diamond 1494 118 1 Eukaryota Metamonada   Parabasalia   Tritrichomonadida Dientamoebidae Histomonas Histomonas meleagridis
30328466 30328466 PRJNA384462_S_NODE_10552_length_180_cov_1.167939_g10436_i0 PRJNA384462 10552 180 1.167939 2.1022902 Trichomonas vaginalis G3 412133 Parabasalia other_Eukaryota 72.8 4.61e-14   NR XP_001301101.1 412133 g10436 i0 63.6 1.9 55 20 91.7 0 15 179 91 145 XP_001301101.1 ribosomal protein family [Trichomonas vaginalis G3] diamond 342 72.8 1 Eukaryota Metamonada   Parabasalia   Trichomonadida Trichomonadidae Trichomonas Trichomonas vaginalis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;