RNAquarium Metadata Server
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contig_metadata

9 rows where bioproject = "PRJNA384462", tax_clade = "Amoebozoa" and tax_phylum = "Discosea"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Discosea · 9 ✖

tax_clade 1

  • Amoebozoa · 9 ✖

bioproject 1

  • PRJNA384462 · 9 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
13159028 13159028 PRJNA384462_S_NODE_11931_length_172_cov_1.235772_g11815_i0 PRJNA384462 11931 172 1.235772 2.12552784 Ripella decalvata 2047822 Discosea other_Eukaryota 241 2.87e-59   NTclustered gi|1269228433|gb|MF683558.1| 2047822 g11815 i0 91.86 88.1511627906977 172 14 100 0 1 172 937 766 Ripella decalvata clone 26.2.14 18S ribosomal RNA gene, partial sequence blastn 15162 241 1 Eukaryota Amoebozoa   Discosea Flabellinia   Vannellidae Ripella Ripella decalvata
16982701 16982701 PRJNA384462_S_NODE_394_length_745_cov_194.385057_g319_i0 PRJNA384462 394 745 194.385057 1448.16867465 Paramoeba perurans 437603 Discosea other_Eukaryota 272 5.26e-68   NTclustered gi|145386786|gb|EF216911.1| 437603 g319 i0 78.378 18.0872483221477 444 79 59 12 59 494 1 435 Neoparamoeba perurans strain GD-HAC/2/2 28S large subunit ribosomal RNA gene, partial sequence blastn 13475 272 1 Eukaryota Amoebozoa   Discosea Flabellinia Dactylopodida Paramoebidae Paramoeba Paramoeba perurans
23357396 23357396 PRJNA384462_S_NODE_5759_length_226_cov_2.802260_g5643_i0 PRJNA384462 5759 226 2.80226 6.3331076 Paravannella minima 1443144 Discosea other_Eukaryota 137 5.400000000000001e-28   NTclustered gi|1583105587|ref|NC_040955.1| 1443144 g5643 i0 79.512 55.0486725663717 205 33 88 9 22 221 3129 2929 Paravannella minima mitochondrion, complete genome blastn 12441 137 1 Eukaryota Amoebozoa   Discosea Flabellinia   Vannellidae Paravannella Paravannella minima
26632007 26632007 PRJNA384462_S_NODE_12941_length_167_cov_0.864407_g12825_i0 PRJNA384462 12941 167 0.864407 1.44355969 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 49.7 4.62e-5   NR XP_004368288.1 1257118 g12825 i0 61.8 3.2874251497006 34 13 61.1 0 167 66 178 211 XP_004368288.1 cysteine proteinase precursor, putative [Acanthamoeba castellanii str. Neff] diamond 549 49.7 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
26743486 26743486 PRJNA384462_S_NODE_15681_length_159_cov_2.681818_g15565_i0 PRJNA384462 15681 159 2.681818 4.26409062 Viridiplantae 33090 Discosea other_Eukaryota 47 3.72e-4   NR XP_004344594.1 1257118 g15565 i0 55.6 1.28301886792453 36 16 67.9 0 6 113 44 79 XP_004344594.1 histone acetyltransferase family protein [Acanthamoeba castellanii str. Neff] diamond 204 47.4 0.991561181434599 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
28559614 28559614 PRJNA384462_S_NODE_12907_length_167_cov_0.864407_g12791_i0 PRJNA384462 12907 167 0.864407 1.44355969 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 61.6 1.02e-9   NR XP_004333791.1 1257118 g12791 i0 53.8 1.79640718562874 52 24 93.4 0 164 9 94 145 XP_004333791.1 Gar1 protein RNA binding region protein [Acanthamoeba castellanii str. Neff] diamond 300 61.6 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
29222727 29222727 PRJNA384462_S_NODE_13349_length_166_cov_0.871795_g13233_i0 PRJNA384462 13349 166 0.871795 1.4471797 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 96.7 8.229999999999999e-23   NR XP_004367925.1 1257118 g13233 i0 72.7 0.993975903614458 55 15 99.4 0 166 2 64 118 XP_004367925.1 ribosomal protein S8e, putative [Acanthamoeba castellanii str. Neff] diamond 165 96.7 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
30864983 30864983 PRJNA384462_S_NODE_3394_length_284_cov_1.514894_g3278_i0 PRJNA384462 3394 284 1.514894 4.30229896 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 170 5.62e-50   NR XP_004341795.1 1257118 g3278 i0 88.8 6.70774647887324 89 10 94 0 3 269 165 253 XP_004341795.1 guanine nucleotide-binding protein beta subunit, putative [Acanthamoeba castellanii str. Neff] diamond 1905 170 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
31451033 31451033 PRJNA384462_S_NODE_14216_length_164_cov_0.860870_g14100_i0 PRJNA384462 14216 164 0.86087 1.4118268 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 46.6 5.54e-4   NR XP_004337492.1 1257118 g14100 i0 88 2.28658536585366 25 3 45.7 0 160 86 412 436 XP_004337492.1 26S protease regulatory subunit 6a, putative [Acanthamoeba castellanii str. Neff] diamond 375 47 0.991489361702128 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;