RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

17 rows where bioproject = "PRJNA383995" and tax_phylum = "Streptophyta"

✎ View and edit SQL

This data as json, CSV (advanced)

analysis 2

tax_superkingdom 1

tax_phylum 1

  • Streptophyta · 17 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA383995 · 17 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3626525 3626525 PRJNA383995_P_NODE_17663_length_163_cov_0.894737_g17564_i0 PRJNA383995 17663 163 0.894737 1.45842131 Triticum 4564 Plants Plants 248 1.61e-61   NTclustered gi|300681419|emb|FN564427.1| 4565 g17564 i0 94.41 27.0736196319018 161 9 100 0 2 162 590177 590337 Triticum aestivum chromosome 3B-specific BAC library, contig ctg0079b blastn 4413 250 0.992 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Poales Poaceae Triticum Triticum aestivum
3626541 3626541 PRJNA383995_P_NODE_9663_length_209_cov_2.468750_g9564_i0 PRJNA383995 9663 209 2.46875 5.1596875 Vigna 3913 Plants Plants 387 4.42e-103   NTclustered gi|2688570838|gb|CP144689.1| 3915 g9564 i0 100 157.052631578947 209 0 100 0 1 209 1386921 1387129 Vigna mungo isolate Urdbean chloroplast, partial sequence blastn 32824 387 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Fabales Fabaceae Vigna Vigna mungo
5508962 5508962 PRJNA383995_P_NODE_17605_length_163_cov_0.894737_g17506_i0 PRJNA383995 17605 163 0.894737 1.45842131 Oryza sativa 4530 Plants Plants 300 4.39e-77   NTclustered gi|30725921|gb|AC099043.6| 39947 g17506 i0 100 6.20245398773006 162 0 99 0 2 163 70206 70045 Oryza sativa chromosome 3 BAC OSJNBa0079B15 genomic sequence, complete sequence blastn 1011 300 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Poales Poaceae Oryza Oryza sativa
9333359 9333359 PRJNA383995_P_NODE_6248_length_254_cov_1.180488_g6149_i0 PRJNA383995 6248 254 1.180488 2.99843952 Ananas comosus 4615 Plants Plants 54.7 0.006   NTclustered gi|1885257722|emb|LR862139.1| 296719 g6149 i0 100 0.114173228346457 29 0 11 0 5 33 19294046 19294018 Ananas comosus var. bracteatus genome assembly, chromosome: 11 blastn 29 54.7 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Poales Bromeliaceae Ananas Ananas comosus
11883968 11883968 PRJNA383995_P_NODE_7270_length_237_cov_1.803191_g7171_i0 PRJNA383995 7270 237 1.803191 4.27356267 Cannabis sativa 3483 Plants Plants 56.5 0.002   NTclustered gi|2748541248|gb|CP158646.1| 3483 g7171 i0 100 0.379746835443038 30 0 13 0 119 148 75903640 75903611 Cannabis sativa cultivar ERBxHO40_23 chromosome 3 blastn 90 56.5 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Rosales Cannabaceae Cannabis Cannabis sativa
13159003 13159003 PRJNA383995_P_NODE_19171_length_161_cov_0.910714_g19072_i0 PRJNA383995 19171 161 0.910714 1.46624954 Allium sativum 4682 Plants Plants 171 3.54e-38   NTclustered gi|2221770600|gb|MK770769.1| 4682 g19072 i0 93.103 0.720496894409938 116 8 72 0 1 116 116 1 Allium sativum satellite AsatSAT189 sequence blastn 116 171 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Asparagales Amaryllidaceae Allium Allium sativum
13829288 13829288 PRJNA383995_P_NODE_9731_length_209_cov_1.093750_g9632_i0 PRJNA383995 9731 209 1.09375 2.2859375 Poaceae 4479 Plants Plants 52.8 0.018   NTclustered gi|1897958810|ref|XR_004853261.1| 4577 g9632 i0 100 0.669856459330144 28 0 13 0 155 182 182 209 PREDICTED: Zea mays uncharacterized lncRNA (LOC118473579), transcript variant X2, ncRNA blastn 140 52.8 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Poales Poaceae Zea Zea mays
16378297 16378297 PRJNA383995_P_NODE_18433_length_162_cov_0.902655_g18334_i0 PRJNA383995 18433 162 0.902655 1.4623011 Poaceae 4479 Plants Plants 300 4.36e-77   NTclustered gi|2155905707|emb|OV049916.1| 4529 g18334 i0 100 101 162 0 100 0 1 162 49167 49006 Oryza rufipogon genome assembly, organelle: plastid:chloroplast blastn 16362 300 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Poales Poaceae Oryza Oryza rufipogon
16378299 16378299 PRJNA383995_P_NODE_18993_length_161_cov_0.910714_g18894_i0 PRJNA383995 18993 161 0.910714 1.46624954 Magnoliopsida 3398 Plants Plants 298 1.56e-76   NTclustered gi|2646016675|ref|XR_009883389.1| 3486 g18894 i0 100 100 161 0 100 0 1 161 1452 1612 PREDICTED: Humulus lupulus 18S ribosomal RNA (LOC133811861), rRNA blastn 16100 298 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Rosales Cannabaceae Humulus Humulus lupulus
18256770 18256770 PRJNA383995_P_NODE_13195_length_181_cov_1.515152_g13096_i0 PRJNA383995 13195 181 1.515152 2.74242512 Triticum aestivum 4565 Plants Plants 335 1.36e-87   NTclustered gi|2123746588|ref|XR_006435168.1| 4565 g13096 i0 100 2 181 0 100 0 1 181 5608 5428 PREDICTED: Triticum aestivum homeobox protein cut-like 1 (LOC123072473), transcript variant X4, misc_RNA blastn 362 335 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Poales Poaceae Triticum Triticum aestivum
18256782 18256782 PRJNA383995_P_NODE_16555_length_165_cov_0.879310_g16456_i0 PRJNA383995 16555 165 0.87931 1.4508615 Cicer arietinum 3827 Plants Plants 305 9.59e-79   NTclustered gi|1535865752|ref|XM_004494231.3| 3827 g16456 i0 100 53.3393939393939 165 0 100 0 1 165 105 269 PREDICTED: Cicer arietinum 60S ribosomal protein L35a-1-like (LOC101514440), mRNA blastn 8801 305 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Fabales Fabaceae Cicer Cicer arietinum
22081734 22081734 PRJNA383995_P_NODE_18558_length_162_cov_0.902655_g18459_i0 PRJNA383995 18558 162 0.902655 1.4623011 Malus domestica 3750 Plants Plants 52.8 0.013   NTclustered gi|2810943380|gb|CP168778.1| 3750 g18459 i0 100 0.172839506172839 28 0 17 0 18 45 20799741 20799714 Malus domestica cultivar Golden Delicious chromosome 14 blastn 28 52.8 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Rosales Rosaceae Malus Malus domestica
24631669 24631669 PRJNA383995_P_NODE_18280_length_162_cov_0.902655_g18181_i0 PRJNA383995 18280 162 0.902655 1.4623011 Triticum monococcum 4568 Plants Plants 246 5.76e-61   NTclustered gi|2581912921|emb|OY737857.1| 4568 g18181 i0 98.561 121.493827160494 139 2 86 0 24 162 33139502 33139364 Triticum monococcum genome assembly, chromosome: UA blastn 19682 246 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Poales Poaceae Triticum Triticum monococcum
29253885 29253885 PRJNA383995_P_NODE_6869_length_244_cov_1.041026_g6770_i0 PRJNA383995 6869 244 1.041026 2.54010344 Tarenaya hassleriana 28532 Plants Plants 45.8 0.00199   NR XP_010548418.1 28532 g6770 i0 37.2 0.959016393442623 78 39 92.2 3 237 13 100 170 XP_010548418.1 PREDICTED: protein DCL, chloroplastic-like [Tarenaya hassleriana] diamond 234 45.8 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Brassicales Cleomaceae Tarenaya Tarenaya hassleriana
29411887 29411887 PRJNA383995_P_NODE_17749_length_163_cov_0.894737_g17650_i0 PRJNA383995 17749 163 0.894737 1.45842131 Vitis vinifera 29760 Plants Plants 63.5 5.8e-10   NR RVW92637.1 29760 g17650 i0 64.3 5.50306748466258 42 15 77.3 0 1 126 722 763 RVW92637.1 Retrovirus-related Pol polyprotein from transposon 17.6 [Vitis vinifera] diamond 897 63.5 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Vitales Vitaceae Vitis Vitis vinifera
30265060 30265060 PRJNA383995_P_NODE_12392_length_187_cov_0.978261_g12293_i0 PRJNA383995 12392 187 0.978261 1.82934807 Oryza sativa Japonica Group 39947 Plants Plants 52.8 5.26e-6   NR BAF23632.1 39947 g12293 i0 46.8 2.82352941176471 47 25 75.4 0 142 2 286 332 BAF23632.1 Os08g0389500 [Oryza sativa Japonica Group] diamond 528 52.8 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Poales Poaceae Oryza Oryza sativa
30391588 30391588 PRJNA383995_P_NODE_15393_length_167_cov_0.864407_g15294_i0 PRJNA383995 15393 167 0.864407 1.44355969 Oryza meyeriana var. granulata 110450 Plants Plants 41.6 0.014   NR KAF0896620.1 110450 g15294 i0 46.8 0.844311377245509 47 24 84.4 1 163 23 14 59 KAF0896620.1 hypothetical protein E2562_026320 [Oryza meyeriana var. granulata] diamond 141 41.6 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Poales Poaceae Oryza Oryza meyeriana

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;