RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJNA383995" and tax_phylum = "Mollusca"

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tax_superkingdom 1

tax_phylum 1

  • Mollusca · 4 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA383995 · 4 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
8728477 8728477 PRJNA383995_P_NODE_727_length_667_cov_2.762136_g638_i0 PRJNA383995 727 667 2.762136 18.42344712 Metazoa 33208 Mollusca Mollusca 1182 0   NTclustered gi|2572452079|ref|XR_009385380.1| 109671 g638 i0 98.651 42.9115442278861 667 9 100 0 1 667 1921 2587 PREDICTED: Physella acuta large subunit ribosomal RNA (LOC131933988), rRNA blastn 28622 1182 1 Eukaryota Opisthokonta Metazoa Mollusca Gastropoda   Physidae Physella Physella acuta
13159005 13159005 PRJNA383995_P_NODE_3411_length_334_cov_1.624561_g3312_i0 PRJNA383995 3411 334 1.624561 5.42603374 Bradybaena similaris 145626 Mollusca Mollusca 58.4 6.77e-4   NTclustered gi|2912995509|dbj|AP039600.1| 145626 g3312 i0 97.059 10.1736526946108 34 1 11 0 75 108 22237722 22237689 Bradybaena similaris mixture of YIPCMo001421 and YIPCMo001540 DNA, chromosome 19, sequence blastn 3398 58.4 1 Eukaryota Opisthokonta Metazoa Mollusca Gastropoda Stylommatophora Camaenidae Bradybaena Bradybaena similaris
22081719 22081719 PRJNA383995_P_NODE_12278_length_187_cov_2.847826_g12179_i0 PRJNA383995 12278 187 2.847826 5.32543462 Physella acuta 109671 Mollusca Mollusca 324 3.07e-84   NTclustered gi|2572452079|ref|XR_009385380.1| 109671 g12179 i0 97.861 2.75401069518717 187 4 100 0 1 187 3566 3752 PREDICTED: Physella acuta large subunit ribosomal RNA (LOC131933988), rRNA blastn 515 324 1 Eukaryota Opisthokonta Metazoa Mollusca Gastropoda   Physidae Physella Physella acuta
22081739 22081739 PRJNA383995_P_NODE_5278_length_274_cov_1.324444_g5179_i0 PRJNA383995 5278 274 1.324444 3.62897656 Bradybaena similaris 145626 Mollusca Mollusca 54.7 0.007   NTclustered gi|2913000417|dbj|AP039607.1| 145626 g5179 i0 96.875 0.233576642335766 32 1 12 0 90 121 8068736 8068705 Bradybaena similaris mixture of YIPCMo001421 and YIPCMo001540 DNA, chromosome 26, sequence blastn 64 54.7 1 Eukaryota Opisthokonta Metazoa Mollusca Gastropoda Stylommatophora Camaenidae Bradybaena Bradybaena similaris

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;