RNAquarium Metadata Server
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contig_metadata

16 rows where bioproject = "PRJNA382558", tax_phylum = "Myxococcota" and tax_superkingdom = "Bacteria"

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analysis 2

tax_superkingdom 1

  • Bacteria · 16 ✖

tax_phylum 1

  • Myxococcota · 16 ✖

tax_kingdom 1

bioproject 1

  • PRJNA382558 · 16 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
405042 405042 PRJNA382558_S_NODE_9081_length_178_cov_4.219858_g9077_i0 PRJNA382558 9081 178 4.219858 7.51134724 Archangium gephyra 48 Bacteria Bacteria 82.4 1.92e-11   NTclustered gi|827418478|gb|CP011509.1| 48 g9077 i0 94.34 0.297752808988764 53 3 30 0 79 131 8935760 8935708 Archangium gephyra strain DSM 2261, complete genome blastn 53 82.4 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales Archangiaceae Archangium Archangium gephyra
1679667 1679667 PRJNA382558_S_NODE_14202_length_155_cov_7.618644_g14198_i0 PRJNA382558 14202 155 7.618644 11.8088982 Stigmatella aurantiaca 41 Bacteria Bacteria 95.3 2.09e-15   NTclustered gi|309390350|gb|CP002271.1| 378806 g14198 i0 91.304 17.3161290322581 69 6 45 0 1 69 6723805 6723873 Stigmatella aurantiaca DW4/3-1, complete genome blastn 2684 95.3 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales Archangiaceae Stigmatella Stigmatella aurantiaca
9332990 9332990 PRJNA382558_S_NODE_3888_length_226_cov_7.835979_g3884_i0 PRJNA382558 3888 226 7.835979 17.70931254 Corallococcus coralloides 184914 Bacteria Bacteria 139 1.5e-28   NTclustered gi|2851136330|gb|CP172866.1| 184914 g3884 i0 78.319 69.9247787610619 226 41 98 7 4 225 9279107 9278886 Corallococcus coralloides strain KYC2213 chromosome, complete genome blastn 15803 139 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales Myxococcaceae Corallococcus Corallococcus coralloides
10003806 10003806 PRJNA382558_S_NODE_13968_length_156_cov_6.210084_g13964_i0 PRJNA382558 13968 156 6.210084 9.68773104 Myxococcus 32 Bacteria Bacteria 171 3.399999999999999e-38   NTclustered gi|2318731907|gb|CP104804.1| 34 g13964 i0 86.928 79.9871794871795 153 18 97 2 1 152 8538102 8537951 Myxococcus xanthus strain DK1050 chromosome blastn 12478 171 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales Myxococcaceae Myxococcus Myxococcus xanthus
10003865 10003865 PRJNA382558_S_NODE_8488_length_181_cov_8.666667_g8484_i0 PRJNA382558 8488 181 8.666667 15.68666727 Pseudomonadati 3379134 Bacteria Bacteria 89.8 1.17e-13   NTclustered gi|161158851|emb|AM746676.1| 448385 g8484 i0 82.407 9.02762430939227 108 13 58 5 76 180 1570140 1570244 Sorangium cellulosum 'So ce 56' complete genome blastn 1634 89.8 1 Bacteria   Pseudomonadati Myxococcota   Polyangiales Polyangiaceae Sorangium Sorangium cellulosum
15707635 15707635 PRJNA382558_S_NODE_2013_length_269_cov_5.150862_g2009_i0 PRJNA382558 2013 269 5.150862 13.85581878 Myxococcus xanthus 34 Bacteria Bacteria 302 2.22e-77   NTclustered gi|1957989826|gb|CP068048.1| 34 g2009 i0 88.934 25.4684014869888 244 27 91 0 26 269 5179952 5179709 Myxococcus xanthus strain R31 chromosome, complete genome blastn 6851 302 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales Myxococcaceae Myxococcus Myxococcus xanthus
19530846 19530846 PRJNA382558_S_NODE_7576_length_187_cov_9.720000_g7572_i0 PRJNA382558 7576 187 9.72 18.1764 Pendulispora albinea 2741071 Bacteria Bacteria 145 2.5699999999999997e-30   NTclustered gi|2698035964|gb|CP089984.1| 2741071 g7572 i0 83.125 44.6149732620321 160 25 85 2 3 161 5376422 5376264 Pendulispora albinea strain MSr11954 chromosome, complete genome blastn 8343 145 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales Pendulisporaceae Pendulispora Pendulispora albinea
23356885 23356885 PRJNA382558_S_NODE_11219_length_167_cov_5.292308_g11215_i0 PRJNA382558 11219 167 5.292308 8.83815436 Cystobacter fuscus 43 Bacteria Bacteria 84.2 4.97e-12   NTclustered gi|2579656172|gb|CP043491.1| 43 g11215 i0 79.032 0.74251497005988 124 24 74 2 45 167 9293051 9293173 Cystobacter fuscus strain Cbf 10 chromosome, complete genome blastn 124 84.2 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales Archangiaceae Cystobacter Cystobacter fuscus
28513218 28513218 PRJNA382558_S_NODE_1107_length_311_cov_8.704380_g1103_i0 PRJNA382558 1107 311 8.70438 27.0706218 Pseudomonadati 3379134 Bacteria Bacteria 91.7 4.92e-19   NR HTN52801.1 1872521 g1103 i0 55.1 5.02572347266881 89 35 85.9 1 309 43 425 508 HTN52801.1 hypothetical protein [Anaeromyxobacter sp.] diamond 1563 92.4 0.992424242424242 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales Anaeromyxobacteraceae Anaeromyxobacter Anaeromyxobacter sp.
29854082 29854082 PRJNA382558_S_NODE_5111_length_210_cov_7.433526_g5107_i0 PRJNA382558 5111 210 7.433526 15.6104046 Myxococcota bacterium 2818507 Bacteria Bacteria 102 2.62e-24   NR MEW5741872.1 2818507 g5107 i0 64.3 6.92857142857143 70 25 100 0 210 1 75 144 MEW5741872.1 alpha/beta hydrolase [Myxococcota bacterium] diamond 1455 102 1 Bacteria   Pseudomonadati Myxococcota         Myxococcota bacterium
30296786 30296786 PRJNA382558_S_NODE_6592_length_195_cov_7.873418_g6588_i0 PRJNA382558 6592 195 7.873418 15.3531651 Myxococcota bacterium 2818507 Bacteria Bacteria 41.6 0.032   NR MDP9033838.1 2818507 g6588 i0 47.5 0.615384615384615 40 19 61.5 1 183 64 52 89 MDP9033838.1 hypothetical protein [Myxococcota bacterium] diamond 120 41.6 1 Bacteria   Pseudomonadati Myxococcota         Myxococcota bacterium
30328456 30328456 PRJNA382558_S_NODE_772_length_337_cov_8.686667_g768_i0 PRJNA382558 772 337 8.686667 29.27406779 Deltaproteobacteria bacterium 2026735 Bacteria Bacteria 135 1.38e-37   NR MBM2803994.1 2026735 g768 i0 70.7 0.818991097922849 92 25 80.1 1 52 321 42 133 MBM2803994.1 uncharacterized protein [Deltaproteobacteria bacterium] diamond 276 135 1 Bacteria   Pseudomonadati Myxococcota Myxococcia       Deltaproteobacteria bacterium
30580459 30580459 PRJNA382558_S_NODE_793_length_335_cov_10.926174_g789_i0 PRJNA382558 793 335 10.926174 36.6026829 Myxococcus qinghaiensis 2906758 Bacteria Bacteria 83.6 2.44e-16   NR WP_323389881.1 2906758 g789 i0 42.7 0.985074626865672 110 60 95.8 2 334 14 108 217 WP_323389881.1 pre-peptidase C-terminal domain-containing protein, partial [Myxococcus qinghaiensis] diamond 330 83.6 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales Myxococcaceae Myxococcus Myxococcus qinghaiensis
31686947 31686947 PRJNA382558_S_NODE_4977_length_211_cov_10.798851_g4973_i0 PRJNA382558 4977 211 10.798851 22.78557561 Myxococcota bacterium 2818507 Bacteria Bacteria 65.9 1.73e-10   NR MES2639945.1 2818507 g4973 i0 53.2 0.881516587677725 62 27 88.2 1 187 2 104 163 MES2639945.1 hypothetical protein [Myxococcota bacterium] diamond 186 65.9 1 Bacteria   Pseudomonadati Myxococcota         Myxococcota bacterium
32400146 32400146 PRJNA382558_S_NODE_15299_length_152_cov_5.591304_g15295_i0 PRJNA382558 15299 152 5.591304 8.49878208 Pseudomonadati 3379134 Bacteria Bacteria 72.8 2.7e-13   NR MBN1210300.1 2484252 g15295 i0 66.7 1.89473684210526 48 16 94.7 0 2 145 623 670 MBN1210300.1 ATP-binding protein [Myxococcaceae bacterium] diamond 288 72.8 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales Myxococcaceae   Myxococcaceae bacterium
32698732 32698732 PRJNA382558_S_NODE_8820_length_179_cov_8.654930_g8816_i0 PRJNA382558 8820 179 8.65493 15.4923247 Myxococcota bacterium 2818507 Bacteria Bacteria 51.2 7.6e-7   NR MEO1335893.1 2818507 g8816 i0 42.6 0.905027932960894 54 29 87.2 1 2 157 3 56 MEO1335893.1 hypothetical protein [Myxococcota bacterium] diamond 162 51.2 1 Bacteria   Pseudomonadati Myxococcota         Myxococcota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;