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contig_metadata

20 rows where bioproject = "PRJNA382558" and tax_phylum = "Gemmatimonadota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Gemmatimonadota · 20 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA382558 · 20 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1679753 1679753 PRJNA382558_S_NODE_42_length_677_cov_23.567187_g40_i0 PRJNA382558 42 677 23.567187 159.54985599 uncultured Gemmatimonadales bacterium 412054 Bacteria Bacteria 477 9.4e-130   NTclustered gi|2874253755|emb|OY969695.1| 412054 g40 i0 81.507 155.308714918759 584 105 86 3 88 668 254556 253973 MAG: uncultured Gemmatimonadales bacterium isolate MFD04967.bin.1.34 genome assembly, chromosome: 1 blastn 105144 477 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     uncultured Gemmatimonadales bacterium
6782721 6782721 PRJNA382558_S_NODE_8606_length_181_cov_4.138889_g8602_i0 PRJNA382558 8606 181 4.138889 7.49138909 uncultured Gemmatimonadales bacterium 412054 Bacteria Bacteria 130 6.9e-26   NTclustered gi|2874253728|emb|OY969570.1| 412054 g8602 i0 79.781 42.7569060773481 183 33 100 3 1 181 4682150 4681970 MAG: uncultured Gemmatimonadales bacterium isolate MFD02840.bin.c.1 genome assembly, chromosome: 1 blastn 7739 130 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     uncultured Gemmatimonadales bacterium
8058219 8058219 PRJNA382558_S_NODE_4307_length_220_cov_8.524590_g4303_i0 PRJNA382558 4307 220 8.52459 18.754098 uncultured Gemmatimonadales bacterium 412054 Bacteria Bacteria 152 1.87e-32   NTclustered gi|2874254107|emb|OY970192.1| 412054 g4303 i0 83.636 26.8454545454545 165 23 74 4 54 216 2756251 2756089 MAG: uncultured Gemmatimonadales bacterium isolate MFD01721.bin.c.5 genome assembly, chromosome: 1 blastn 5906 152 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     uncultured Gemmatimonadales bacterium
13158754 13158754 PRJNA382558_S_NODE_891_length_327_cov_5.224138_g887_i0 PRJNA382558 891 327 5.224138 17.08293126 Gemmatimonadales bacterium 2448054 Bacteria Bacteria 86.3 2.64e-17   NR HEX7918898.1 2448054 g887 i0 77.6 0.44954128440367 49 11 45 0 2 148 313 361 HEX7918898.1 M13 family metallopeptidase [Gemmatimonadales bacterium] diamond 147 86.3 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     Gemmatimonadales bacterium
16982367 16982367 PRJNA382558_S_NODE_7254_length_190_cov_5.993464_g7250_i0 PRJNA382558 7254 190 5.993464 11.3875816 Gemmatimonadaceae bacterium 2026741 Bacteria Bacteria 83.6 1.29e-17   NR HEY4304911.1 2026741 g7250 i0 57.1 3.97894736842105 63 27 99.5 0 189 1 173 235 HEY4304911.1 DUF4386 domain-containing protein [Gemmatimonadaceae bacterium] diamond 756 83.6 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae   Gemmatimonadaceae bacterium
18256302 18256302 PRJNA382558_S_NODE_11575_length_165_cov_7.601562_g11571_i0 PRJNA382558 11575 165 7.601562 12.5425773 Gemmatimonadales bacterium 2448054 Bacteria Bacteria 70.5 2.09e-12   NR HXJ29969.1 2448054 g11571 i0 61.8 2 55 19 96.4 1 161 3 250 304 HXJ29969.1 M13 family metallopeptidase [Gemmatimonadales bacterium] diamond 330 70.5 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     Gemmatimonadales bacterium
18256556 18256556 PRJNA382558_S_NODE_9695_length_174_cov_7.547445_g9691_i0 PRJNA382558 9695 174 7.547445 13.1325543 uncultured Gemmatimonadales bacterium 412054 Bacteria Bacteria 161 2.33e-35   NTclustered gi|2874253755|emb|OY969695.1| 412054 g9691 i0 84.906 167.959770114943 159 24 91 0 13 171 218525 218683 MAG: uncultured Gemmatimonadales bacterium isolate MFD04967.bin.1.34 genome assembly, chromosome: 1 blastn 29225 161 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     uncultured Gemmatimonadales bacterium
22081435 22081435 PRJNA382558_S_NODE_6338_length_197_cov_9.937500_g6334_i0 PRJNA382558 6338 197 9.9375 19.576875 uncultured Gemmatimonadales bacterium 412054 Bacteria Bacteria 219 1.59e-52   NTclustered gi|2874253755|emb|OY969695.1| 412054 g6334 i0 86.802 23.756345177665 197 24 99 2 1 196 131461 131266 MAG: uncultured Gemmatimonadales bacterium isolate MFD04967.bin.1.34 genome assembly, chromosome: 1 blastn 4680 219 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     uncultured Gemmatimonadales bacterium
27423034 27423034 PRJNA382558_S_NODE_23_length_871_cov_12.105516_g21_i0 PRJNA382558 23 871 12.105516 105.43904436 Gemmatimonadaceae bacterium 2026741 Bacteria Bacteria 402 5.9e-139   NR HXG72350.1 2026741 g21 i0 99.5 0.709529276693456 206 1 71 0 869 252 45 250 HXG72350.1 hypothetical protein [Gemmatimonadaceae bacterium] diamond 618 402 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae   Gemmatimonadaceae bacterium
27707386 27707386 PRJNA382558_S_NODE_1184_length_306_cov_5.620818_g1180_i0 PRJNA382558 1184 306 5.620818 17.19970308 Gemmatimonadaceae bacterium 2026741 Bacteria Bacteria 105 1.64e-27   NR HXG72343.1 2026741 g1180 i0 96.4 0.549019607843137 56 2 54.9 0 139 306 1 56 HXG72343.1 hypothetical protein [Gemmatimonadaceae bacterium] diamond 168 105 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae   Gemmatimonadaceae bacterium
28622762 28622762 PRJNA382558_S_NODE_13027_length_159_cov_8.721311_g13023_i0 PRJNA382558 13027 159 8.721311 13.86688449 Gemmatimonadaceae bacterium 2026741 Bacteria Bacteria 112 1.95e-30   NR HXG72352.1 2026741 g13023 i0 100 0.981132075471698 52 0 98.1 0 157 2 52 103 HXG72352.1 hypothetical protein [Gemmatimonadaceae bacterium] diamond 156 112 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae   Gemmatimonadaceae bacterium
28938484 28938484 PRJNA382558_S_NODE_4188_length_222_cov_5.767568_g4184_i0 PRJNA382558 4188 222 5.767568 12.80400096 Longimicrobium sp. 2029185 Bacteria Bacteria 44.7 0.00562   NR WP_331126392.1 2029185 g4184 i0 62.2 0.5 37 10 50 1 2 112 271 303 WP_331126392.1 hypothetical protein [Longimicrobium sp.] diamond 111 44.7 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Longimicrobiia Longimicrobiales Longimicrobiaceae Longimicrobium Longimicrobium sp.
29443294 29443294 PRJNA382558_S_NODE_5510_length_206_cov_4.680473_g5506_i0 PRJNA382558 5510 206 4.680473 9.64177438 Gemmatimonadales bacterium 2448054 Bacteria Bacteria 54.3 1.86e-6   NR MFL5494705.1 2448054 g5506 i0 58.5 0.597087378640777 41 17 59.7 0 129 7 41 81 MFL5494705.1 M13 family peptidase [Gemmatimonadales bacterium] diamond 123 54.3 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     Gemmatimonadales bacterium
30137964 30137964 PRJNA382558_S_NODE_10192_length_172_cov_5.207407_g10188_i0 PRJNA382558 10192 172 5.207407 8.95674004 Longimicrobium sp. 2029185 Bacteria Bacteria 95.9 2.19e-22   NR HEU4561388.1 2029185 g10188 i0 76.4 0.959302325581395 55 13 95.9 0 2 166 145 199 HEU4561388.1 class I SAM-dependent methyltransferase [Longimicrobium sp.] diamond 165 95.9 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Longimicrobiia Longimicrobiales Longimicrobiaceae Longimicrobium Longimicrobium sp.
30233114 30233114 PRJNA382558_S_NODE_4892_length_212_cov_10.748571_g4888_i0 PRJNA382558 4892 212 10.748571 22.78697052 Gemmatimonadetes bacterium 13_2_2 1805206 Bacteria Bacteria 48.9 1.58e-4   NR OLB17304.1 1805206 g4888 i0 64.7 1.34433962264151 34 12 48.1 0 109 210 11 44 OLB17304.1 MAG: MarR family transcriptional regulator [Gemmatimonadetes bacterium 13_2_20CM_69_8] diamond 285 48.9 1 Bacteria FCB group Pseudomonadati Gemmatimonadota         Gemmatimonadetes bacterium 13_2_20CM_69_8
30738564 30738564 PRJNA382558_S_NODE_1994_length_269_cov_11.737069_g1990_i0 PRJNA382558 1994 269 11.737069 31.57271561 Gemmatimonadaceae bacterium 2026741 Bacteria Bacteria 115 1.65e-29   NR HXG72350.1 2026741 g1990 i0 100 0.591078066914498 53 0 59.1 0 161 3 1 53 HXG72350.1 hypothetical protein [Gemmatimonadaceae bacterium] diamond 159 115 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae   Gemmatimonadaceae bacterium
31244157 31244157 PRJNA382558_S_NODE_10235_length_171_cov_12.029851_g10231_i0 PRJNA382558 10235 171 12.029851 20.57104521 Gemmatimonadaceae bacterium 2026741 Bacteria Bacteria 110 1.19e-29   NR HXG72351.1 2026741 g10231 i0 100 0.982456140350877 56 0 98.2 0 2 169 36 91 HXG72351.1 hypothetical protein [Gemmatimonadaceae bacterium] diamond 168 110 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae   Gemmatimonadaceae bacterium
32224950 32224950 PRJNA382558_S_NODE_1178_length_306_cov_6.308550_g1174_i0 PRJNA382558 1178 306 6.30855 19.304163 Gemmatimonadaceae bacterium 2026741 Bacteria Bacteria 108 2.78e-28   NR HXG72349.1 2026741 g1174 i0 70.3 0.627450980392157 64 19 62.7 0 305 114 40 103 HXG72349.1 hypothetical protein [Gemmatimonadaceae bacterium] diamond 192 108 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae   Gemmatimonadaceae bacterium
32288504 32288504 PRJNA382558_S_NODE_939_length_323_cov_5.937063_g935_i0 PRJNA382558 939 323 5.937063 19.17671349 Gemmatimonadota bacterium 2026742 Bacteria Bacteria 129 1.1e-34   NR MEW5918430.1 2026742 g935 i0 61.7 1.98761609907121 107 41 99.4 0 323 3 10 116 MEW5918430.1 DUF4386 domain-containing protein [Gemmatimonadota bacterium] diamond 642 129 1 Bacteria FCB group Pseudomonadati Gemmatimonadota         Gemmatimonadota bacterium
32761803 32761803 PRJNA382558_S_NODE_9280_length_176_cov_13.007194_g9276_i0 PRJNA382558 9280 176 13.007194 22.89266144 Gemmatimonadaceae bacterium 2026741 Bacteria Bacteria 75.9 5.01e-16   NR HXG72352.1 2026741 g9276 i0 100 0.579545454545455 34 0 58 0 103 2 1 34 HXG72352.1 hypothetical protein [Gemmatimonadaceae bacterium] diamond 102 75.9 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae   Gemmatimonadaceae bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;