RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA382558", tax_clade = "Opisthokonta" and tax_phylum = "Arthropoda"

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tax_superkingdom 1

tax_phylum 1

  • Arthropoda · 3 ✖

tax_kingdom 1

tax_clade 1

  • Opisthokonta · 3 ✖

bioproject 1

  • PRJNA382558 · 3 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
13829170 13829170 PRJNA382558_S_NODE_12791_length_160_cov_7.658537_g12787_i0 PRJNA382558 12791 160 7.658537 12.2536592 Timema 61471 Arthropoda Arthropoda 54.7 0.004   NTclustered gi|1962654685|emb|OE179204.1| 61474 g12787 i0 96.875 0.8 32 1 20 0 48 79 343434 343465 2_Tcm_b3v08 blastn 128 54.7 1 Eukaryota Opisthokonta Metazoa Arthropoda Insecta Phasmatodea Timematidae Timema Timema californicum
16982407 16982407 PRJNA382558_S_NODE_9294_length_176_cov_9.978417_g9290_i0 PRJNA382558 9294 176 9.978417 17.56201392 Euproctis chrysorrhoea 987934 Arthropoda Arthropoda 52.8 0.015   NTclustered gi|2918370019|emb|OZ237906.1| 987934 g9290 i0 100 0.159090909090909 28 0 16 0 80 107 42169480 42169507 Euproctis chrysorrhoea genome assembly, chromosome: 2 blastn 28 52.8 1 Eukaryota Opisthokonta Metazoa Arthropoda Insecta Lepidoptera Erebidae Euproctis Euproctis chrysorrhoea
18256480 18256480 PRJNA382558_S_NODE_6015_length_200_cov_15.846626_g6011_i0 PRJNA382558 6015 200 15.846626 31.693252 Cydia pomonella 82600 Arthropoda Arthropoda 56.5 0.001   NTclustered gi|2639375780|ref|XM_061862610.1| 82600 g6011 i0 96.97 0.165 33 1 17 0 136 168 55 87 PREDICTED: Cydia pomonella cytochrome b5 reductase 4 (LOC133526133), transcript variant X2, mRNA blastn 33 56.5 1 Eukaryota Opisthokonta Metazoa Arthropoda Insecta Lepidoptera Tortricidae Cydia Cydia pomonella

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;