RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

13 rows where bioproject = "PRJNA382558" and tax_clade = "Embryophyta"

✎ View and edit SQL

This data as json, CSV (advanced)

analysis 2

tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • Embryophyta · 13 ✖

bioproject 1

  • PRJNA382558 · 13 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1075711 1075711 PRJNA382558_S_NODE_9841_length_173_cov_13.308824_g9837_i0 PRJNA382558 9841 173 13.308824 23.02426552 Solanum 4107 Plants Plants 318 1.3e-82   NTclustered gi|2839189686|ref|XR_011219713.1| 4081 g9837 i0 100 98.849710982659 172 0 99 0 2 173 2623 2452 PREDICTED: Solanum lycopersicum 28S ribosomal RNA (LOC138346999), rRNA blastn 17101 318 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Solanales Solanaceae Solanum Solanum lycopersicum
3626436 3626436 PRJNA382558_S_NODE_1663_length_282_cov_14.616327_g1659_i0 PRJNA382558 1663 282 14.616327 41.21804214 Eukaryota 2759 Plants Plants 516 7.67e-142   NTclustered gi|2839186375|ref|XR_011216401.1| 4081 g1659 i0 100 99.9255319148936 279 0 99 0 3 281 626 904 PREDICTED: Solanum lycopersicum 18S ribosomal RNA (LOC138343606), rRNA blastn 28179 516 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Solanales Solanaceae Solanum Solanum lycopersicum
6178727 6178727 PRJNA382558_S_NODE_8465_length_181_cov_10.659722_g8461_i0 PRJNA382558 8465 181 10.659722 19.29409682 Solanaceae 4070 Plants Plants 335 1.36e-87   NTclustered gi|2839189188|ref|XR_011219215.1| 4081 g8461 i0 100 100 181 0 100 0 1 181 1523 1703 PREDICTED: Solanum lycopersicum 28S ribosomal RNA (LOC138346485), rRNA blastn 18100 335 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Solanales Solanaceae Solanum Solanum lycopersicum
6782629 6782629 PRJNA382558_S_NODE_4186_length_222_cov_5.908108_g4182_i0 PRJNA382558 4186 222 5.908108 13.11599976 Triticum aestivum 4565 Plants Plants 311 2.94e-80   NTclustered gi|1251765982|dbj|AK447493.1| 4565 g4182 i0 91.892 42.9009009009009 222 18 100 0 1 222 3749 3528 Triticum aestivum mRNA, clone: tplb0033a11, cultivar Chinese Spring blastn 9524 311 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Poales Poaceae Triticum Triticum aestivum
6782631 6782631 PRJNA382558_S_NODE_4326_length_220_cov_6.896175_g4322_i0 PRJNA382558 4326 220 6.896175 15.171585 Triticum aestivum 4565 Plants Plants 340 3.71e-89   NTclustered gi|1251765982|dbj|AK447493.1| 4565 g4322 i0 94.545 78.2818181818182 220 12 100 0 1 220 5326 5545 Triticum aestivum mRNA, clone: tplb0033a11, cultivar Chinese Spring blastn 17222 340 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Poales Poaceae Triticum Triticum aestivum
11883574 11883574 PRJNA382558_S_NODE_310_length_415_cov_9.092593_g306_i0 PRJNA382558 310 415 9.092593 37.73426095 Triticum aestivum 4565 Plants Plants 267 1.31e-66   NTclustered gi|1251765982|dbj|AK447493.1| 4565 g306 i0 81.633 25.6795180722892 343 43 81 14 1 337 5190 4862 Triticum aestivum mRNA, clone: tplb0033a11, cultivar Chinese Spring blastn 10657 267 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Poales Poaceae Triticum Triticum aestivum
14433616 14433616 PRJNA382558_S_NODE_15492_length_151_cov_8.219298_g15488_i0 PRJNA382558 15492 151 8.219298 12.41113998 Solanum lycopersicum 4081 Plants Plants 279 5.19e-71   NTclustered gi|2839189188|ref|XR_011219215.1| 4081 g15488 i0 100 100 151 0 100 0 1 151 1306 1456 PREDICTED: Solanum lycopersicum 28S ribosomal RNA (LOC138346485), rRNA blastn 15100 279 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Solanales Solanaceae Solanum Solanum lycopersicum
16378169 16378169 PRJNA382558_S_NODE_12473_length_162_cov_3.120000_g12469_i0 PRJNA382558 12473 162 3.12 5.0544 Eukaryota 2759 Plants Plants 56.5 0.001   NTclustered gi|1191786913|ref|XM_021111817.1| 130454 g12469 i0 89.13 0.654320987654321 46 4 28 1 67 112 89 45 PREDICTED: Arachis ipaensis uncharacterized LOC110266799 (LOC110266799), mRNA blastn 106 56.5 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Fabales Fabaceae Arachis Arachis ipaensis
18256284 18256284 PRJNA382558_S_NODE_10435_length_170_cov_9.285714_g10431_i0 PRJNA382558 10435 170 9.285714 15.7857138 Triticum aestivum 4565 Plants Plants 231 1.6999999999999997e-56   NTclustered gi|1251765982|dbj|AK447493.1| 4565 g10431 i0 91.176 98.4764705882353 170 15 100 0 1 170 3150 3319 Triticum aestivum mRNA, clone: tplb0033a11, cultivar Chinese Spring blastn 16741 231 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Poales Poaceae Triticum Triticum aestivum
19530874 19530874 PRJNA382558_S_NODE_9116_length_177_cov_9.800000_g9112_i0 PRJNA382558 9116 177 9.8 17.346 Triticum aestivum 4565 Plants Plants 248 1.7799999999999998e-61   NTclustered gi|1251765982|dbj|AK447493.1| 4565 g9112 i0 92.045 84.4971751412429 176 14 99 0 2 177 5704 5879 Triticum aestivum mRNA, clone: tplb0033a11, cultivar Chinese Spring blastn 14956 248 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Poales Poaceae Triticum Triticum aestivum
22752531 22752531 PRJNA382558_S_NODE_11518_length_165_cov_16.500000_g11514_i0 PRJNA382558 11518 165 16.5 27.225 Magnoliopsida 3398 Plants Plants 298 1.61e-76   NTclustered gi|1878849229|gb|MT796565.1| 3505 g11514 i0 99.39 99.3939393939394 164 1 99 0 1 164 2715 2878 Betula pendula isolate DM301 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 16400 298 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Fagales Betulaceae Betula Betula pendula
31514446 31514446 PRJNA382558_S_NODE_10396_length_171_cov_4.395522_g10392_i0 PRJNA382558 10396 171 4.395522 7.51634262 root 1 Root_unresolved Root_unresolved 55.8 3.31e-7   NR GEU28503.1 118510 g10392 i0 58 1.80701754385965 50 20 86 1 166 20 1056 1105 GEU28503.1 hypothetical protein [Tanacetum cinerariifolium] diamond 309 55.8 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Asterales Asteraceae Tanacetum Tanacetum cinerariifolium
32793037 32793037 PRJNA382558_S_NODE_3520_length_232_cov_8.184615_g3516_i0 PRJNA382558 3520 232 8.184615 18.9883068 Triticum aestivum 4565 Plants Plants 42.4 0.0419   NR KAF7031199.1 4565 g3516 i0 44 0.646551724137931 50 28 64.7 0 15 164 119 168 KAF7031199.1 hypothetical protein CFC21_042570 [Triticum aestivum] diamond 150 42.4 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Poales Poaceae Triticum Triticum aestivum

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;