RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJNA382357" and tax_phylum = "Rhodothermota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Rhodothermota · 4 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA382357 · 4 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1679201 1679201 PRJNA382357_P_NODE_76962_length_271_cov_14.642857_g76223_i0 PRJNA382357 76962 271 14.642857 39.68214247 Rubricoccaceae bacterium 2838334 Bacteria Bacteria 309 1.3400000000000002e-79   NTclustered gi|2874254104|emb|OY970187.1| 2838334 g76223 i0 92.627 784.166051660517 217 12 100 4 1 215 1307580 1307794 MAG: Rubricoccaceae bacterium isolate MFD03250.bin.2.52 genome assembly, chromosome: 1 blastn 212509 309 1 Bacteria FCB group Pseudomonadati Rhodothermota Rhodothermia Rhodothermales Rubricoccaceae   Rubricoccaceae bacterium
22751812 22751812 PRJNA382357_P_NODE_18878_length_505_cov_6.554054_g18146_i0 PRJNA382357 18878 505 6.554054 33.0979727 Rubrivirga 1434037 Bacteria Bacteria 422 3.27e-113   NTclustered gi|2890853429|gb|CP177355.1| 3391575 g18146 i0 90.994 192.532673267327 322 15 94 5 184 505 805990 806297 Rubrivirga sp. IMCC43871 chromosome, complete genome blastn 97229 422 1 Bacteria FCB group Pseudomonadati Rhodothermota Rhodothermia Rhodothermales Rubricoccaceae Rubrivirga Rubrivirga sp. IMCC43871
23355498 23355498 PRJNA382357_P_NODE_1879_length_1277_cov_8.969572_g1429_i0 PRJNA382357 1879 1277 8.969572 114.54143444 Rubrivirga sp. IMCC43871 3391575 Bacteria Bacteria 889 0   NTclustered gi|2890853429|gb|CP177355.1| 3391575 g1429 i0 83.086 407.126859827721 1011 138 78 30 287 1277 806065 807062 Rubrivirga sp. IMCC43871 chromosome, complete genome blastn 519901 889 1 Bacteria FCB group Pseudomonadati Rhodothermota Rhodothermia Rhodothermales Rubricoccaceae Rubrivirga Rubrivirga sp. IMCC43871
31497358 31497358 PRJNA382357_P_NODE_36616_length_377_cov_1.360759_g35877_i0 PRJNA382357 36616 377 1.360759 5.13006143 Rubricoccaceae bacterium 2838334 Bacteria Bacteria 110 6.57e-27   NR HEX8384930.1 2838334 g35877 i0 70.7 0.652519893899204 82 24 65.3 0 132 377 112 193 HEX8384930.1 hypothetical protein [Rubricoccaceae bacterium] diamond 246 110 1 Bacteria FCB group Pseudomonadati Rhodothermota Rhodothermia Rhodothermales Rubricoccaceae   Rubricoccaceae bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;