RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJNA382357" and tax_phylum = "Parabasalia"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Parabasalia · 4 ✖

tax_clade 1

bioproject 1

  • PRJNA382357 · 4 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1678385 1678385 PRJNA382357_P_NODE_29182_length_417_cov_4.441011_g28444_i0 PRJNA382357 29182 417 4.441011 18.51901587 Tritrichomonas casperi 2962107 Parabasalia other_Eukaryota 492 1.9899999999999998e-134   NTclustered gi|2264298341|gb|ON927245.1| 2962107 g28444 i0 100 85.705035971223 266 0 100 0 152 417 1248 983 Tritrichomonas casperi isolate LT small subunit ribosomal RNA gene, partial sequence blastn 35739 492 1 Eukaryota Metamonada   Parabasalia   Tritrichomonadida Tritrichomonadidae Tritrichomonas Tritrichomonas casperi
8056595 8056595 PRJNA382357_P_NODE_17927_length_517_cov_1.403509_g17197_i0 PRJNA382357 17927 517 1.403509 7.25614153 Trichomonas vaginalis 5722 Parabasalia other_Eukaryota 54.7 0.014   NTclustered gi|123976892|ref|XM_001330614.1| 412133 g17197 i0 87.755 0.0947775628626693 49 3 9 3 95 143 2920 2875 Trichomonas vaginalis G3 A-type inclusion protein-related family (TVAGG3_0868270), partial mRNA blastn 49 54.7 1 Eukaryota Metamonada   Parabasalia   Trichomonadida Trichomonadidae Trichomonas Trichomonas vaginalis
28117274 28117274 PRJNA382357_P_NODE_85885_length_259_cov_0.984848_g85146_i0 PRJNA382357 85885 259 0.984848 2.55075632 Histomonas meleagridis 135588 Parabasalia other_Eukaryota 79 8.18e-15   NR XP_067769338.1 135588 g85146 i0 45.9 0.984555984555985 85 46 98.5 0 256 2 152 236 XP_067769338.1 cytoplasmic heat shock protein 70 [Histomonas meleagridis] diamond 255 79 1 Eukaryota Metamonada   Parabasalia   Tritrichomonadida Dientamoebidae Histomonas Histomonas meleagridis
32224926 32224926 PRJNA382357_P_NODE_63798_length_295_cov_1.111111_g63059_i0 PRJNA382357 63798 295 1.111111 3.27777745 Trichomonas vaginalis G3 412133 Parabasalia other_Eukaryota 58.5 1.61e-7   NR XP_001305018.1 412133 g63059 i0 37.8 0.752542372881356 74 42 72.2 2 214 2 57 129 XP_001305018.1 protein serine/threonine kinase protein [Trichomonas vaginalis G3] diamond 222 58.5 1 Eukaryota Metamonada   Parabasalia   Trichomonadida Trichomonadidae Trichomonas Trichomonas vaginalis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;