RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA382357", tax_kingdom = "Pararnavirae" and tax_superkingdom = "Viruses"

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tax_superkingdom 1

  • Viruses · 3 ✖

tax_phylum 1

tax_kingdom 1

  • Pararnavirae · 3 ✖

bioproject 1

  • PRJNA382357 · 3 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
11277519 11277519 PRJNA382357_P_NODE_10489_length_645_cov_7.743151_g9782_i0 PRJNA382357 10489 645 7.743151 49.94332395 root 1 Root_unresolved Root_unresolved 638 3.8699999999999993e-178   NTclustered gi|996270715|gb|KU324804.1| 11786 g9782 i0 97.105 109.959689922481 380 8 91 2 266 645 590 214 Murine leukemia virus isolate Cz524, complete genome blastn 70924 638 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Gammaretrovirus Gammaretrovirus murleu
12554175 12554175 PRJNA382357_P_NODE_8750_length_695_cov_10.233438_g8063_i0 PRJNA382357 8750 695 10.233438 71.1223941 root 1 Root_unresolved Root_unresolved 604 4.25e-168   NTclustered gi|996270715|gb|KU324804.1| 11786 g8063 i0 100 100.674820143885 327 0 100 0 369 695 540 214 Murine leukemia virus isolate Cz524, complete genome blastn 69969 604 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Gammaretrovirus Gammaretrovirus murleu
19530160 19530160 PRJNA382357_P_NODE_73156_length_277_cov_12.606481_g72417_i0 PRJNA382357 73156 277 12.606481 34.91995237 Lentivirus humimdef1 3418650 Viruses Viruses 52.8 0.025   NTclustered gi|1625847829|gb|MK384881.1| 11676 g72417 i0 100 0.404332129963899 28 0 20 0 241 268 1496 1469 HIV-1 isolate 38Pt1-2012-P4C3 from USA defective genome blastn 112 52.8 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Lentivirus Lentivirus humimdef1

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;