RNAquarium Metadata Server
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contig_metadata

6 rows where bioproject = "PRJNA382357", tax_clade = "Sar" and tax_phylum = "Bacillariophyta"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Bacillariophyta · 6 ✖

tax_clade 1

bioproject 1

  • PRJNA382357 · 6 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4230615 4230615 PRJNA382357_P_NODE_1924_length_1266_cov_8.963485_g1471_i0 PRJNA382357 1924 1266 8.963485 113.4777201 Eunotia naegelii 1458866 SAR_Eukaryotes SAR_Eukaryotes 104 3.52e-17   NTclustered gi|1418586621|ref|NC_037987.1| 1458866 g1471 i0 78.571 9.78988941548183 168 29 13 5 570 736 11999 12160 Eunotia naegelii strain UTEX FD354 mitochondrion, complete genome blastn 12394 104 1 Eukaryota Sar   Bacillariophyta Bacillariophyceae Eunotiales Eunotiaceae Eunotia Eunotia naegelii
4230937 4230937 PRJNA382357_P_NODE_38384_length_369_cov_2.155844_g37645_i0 PRJNA382357 38384 369 2.155844 7.95506436 Pinnularia borealis complex sp. 2725370 SAR_Eukaryotes SAR_Eukaryotes 453 8.23e-123   NTclustered gi|1829658613|gb|MN940563.1| 2725370 g37645 i0 99.206 100.043360433604 252 1 100 1 1 251 997 746 Pinnularia borealis complex sp. voucher NO_10_Rb_06 18S small subunit ribosomal RNA gene, partial sequence blastn 36916 453 1 Eukaryota Sar   Bacillariophyta Bacillariophyceae Naviculales Pinnulariaceae Pinnularia Pinnularia borealis complex sp.
4230943 4230943 PRJNA382357_P_NODE_38804_length_367_cov_3.669935_g38065_i0 PRJNA382357 38804 367 3.669935 13.46866145 Asterionellopsis glacialis 33640 SAR_Eukaryotes SAR_Eukaryotes 56.5 0.003   NTclustered gi|662012377|ref|NC_024080.1| 33640 g38065 i0 96.97 0.0899182561307902 33 1 9 0 158 190 85091 85123 Asterionellopsis glacialis chloroplast, complete genome blastn 33 56.5 1 Eukaryota Sar   Bacillariophyta Fragilariophyceae Fragilariales Fragilariaceae Asterionellopsis Asterionellopsis glacialis
18255365 18255365 PRJNA382357_P_NODE_42555_length_352_cov_47.567010_g41816_i0 PRJNA382357 42555 352 47.56701 167.4358752 Bacillariophyceae 33849 SAR_Eukaryotes SAR_Eukaryotes 186 3.02e-52   NR KAG7364910.1 303405 g41816 i0 94 11.3778409090909 84 5 71.6 0 1 252 338 421 KAG7364910.1 radical SAM superfamily-domain containing protein [Nitzschia inconspicua] diamond 4005 186 1 Eukaryota Sar   Bacillariophyta Bacillariophyceae Bacillariales Bacillariaceae Nitzschia Nitzschia inconspicua
26822069 26822069 PRJNA382357_P_NODE_32621_length_397_cov_1.214286_g31882_i0 PRJNA382357 32621 397 1.214286 4.82071542 Cylindrotheca closterium 2856 SAR_Eukaryotes SAR_Eukaryotes 103 1.5199999999999995e-23   NR CAJ1898119.1 2856 g31882 i0 52.8 0.816120906801008 108 38 71.8 2 109 393 74 181 CAJ1898119.1 unnamed protein product [Cylindrotheca closterium] diamond 324 103 1 Eukaryota Sar   Bacillariophyta Bacillariophyceae Bacillariales Bacillariaceae Cylindrotheca Cylindrotheca closterium
27548978 27548978 PRJNA382357_P_NODE_7584_length_741_cov_1.420588_g6914_i0 PRJNA382357 7584 741 1.420588 10.52655708 Seminavis robusta 568900 SAR_Eukaryotes SAR_Eukaryotes 55.5 6.61e-5   NR CAB9496249.1 568900 g6914 i0 57.5 0.161943319838057 40 16 15.8 1 708 592 240 279 CAB9496249.1 ankyrin repeat protein [Seminavis robusta] diamond 120 55.5 1 Eukaryota Sar   Bacillariophyta Bacillariophyceae Naviculales Naviculaceae Seminavis Seminavis robusta

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;