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contig_metadata

27 rows where bioproject = "PRJNA382357", tax_clade = "PVC group" and tax_phylum = "Chlamydiota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Chlamydiota · 27 ✖

tax_kingdom 1

tax_clade 1

  • PVC group · 27 ✖

bioproject 1

  • PRJNA382357 · 27 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3625390 3625390 PRJNA382357_P_NODE_142623_length_207_cov_5.356164_g141884_i0 PRJNA382357 142623 207 5.356164 11.08725948 Candidatus Protochlamydia 282132 Bacteria Bacteria 248 2.15e-61   NTclustered gi|1691252667|emb|BX908798.2| 264201 g141884 i0 97.902 120.840579710145 143 3 100 0 1 143 1250373 1250515 Candidatus Protochlamydia amoebophila UWE25 complete genome blastn 25014 248 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales Parachlamydiaceae Candidatus Protochlamydia Candidatus Protochlamydia amoebophila
3626347 3626347 PRJNA382357_P_NODE_94243_length_248_cov_8.481283_g93504_i0 PRJNA382357 94243 248 8.481283 21.03358184 Candidatus Protochlamydia 282132 Bacteria Bacteria 257 4.43e-64   NTclustered gi|1691252667|emb|BX908798.2| 264201 g93504 i0 98.621 109.713709677419 145 2 93 0 104 248 1250517 1250373 Candidatus Protochlamydia amoebophila UWE25 complete genome blastn 27209 257 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales Parachlamydiaceae Candidatus Protochlamydia Candidatus Protochlamydia amoebophila
22079166 22079166 PRJNA382357_P_NODE_123218_length_220_cov_2.050314_g122479_i0 PRJNA382357 123218 220 2.050314 4.5106908 uncultured Parachlamydiaceae bacterium 464461 Bacteria Bacteria 200 6.57e-47   NTclustered gi|2874253811|emb|OY969795.1| 464461 g122479 i0 84.577 0.913636363636364 201 31 91 0 20 220 653756 653956 MAG: uncultured Parachlamydiaceae bacterium isolate MFD05502.bin.c.3 genome assembly, chromosome: 1 blastn 201 200 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales Parachlamydiaceae   uncultured Parachlamydiaceae bacterium
27028802 27028802 PRJNA382357_P_NODE_59342_length_304_cov_3.312757_g58603_i0 PRJNA382357 59342 304 3.312757 10.07078128 Bacteria 2 Bacteria Bacteria 116 9.99e-28   NR MEI8329447.1 2052156 g58603 i0 69.3 2.18092105263158 75 23 74 0 34 258 127 201 MEI8329447.1 oligopeptide transporter, OPT family [Chlamydiia bacterium] diamond 663 116 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia       Chlamydiia bacterium
27233121 27233121 PRJNA382357_P_NODE_20123_length_491_cov_5.934884_g19390_i0 PRJNA382357 20123 491 5.934884 29.14028044 Rhabdochlamydiaceae bacterium 2047756 Bacteria Bacteria 201 3.2899999999999997e-56   NR MBX9924108.1 2047756 g19390 i0 82.1 0.75152749490835 123 22 75.2 0 369 1 1685 1807 MBX9924108.1 excinuclease ABC subunit UvrA [Rhabdochlamydiaceae bacterium] diamond 369 201 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales Candidatus Rhabdochlamydiaceae   Rhabdochlamydiaceae bacterium
27517446 27517446 PRJNA382357_P_NODE_15363_length_551_cov_1.755102_g14639_i0 PRJNA382357 15363 551 1.755102 9.67061202 Parachlamydia sp. 2052048 Bacteria Bacteria 172 1.52e-49   NR MCE2982812.1 2052048 g14639 i0 59.2 0.827586206896552 152 56 82.2 2 97 549 159 305 MCE2982812.1 collagen-like protein [Parachlamydia sp.] diamond 456 172 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales Parachlamydiaceae Parachlamydia Parachlamydia sp.
28085750 28085750 PRJNA382357_P_NODE_88225_length_256_cov_1.000000_g87486_i0 PRJNA382357 88225 256 1 2.56 Parachlamydiaceae bacterium 2052176 Bacteria Bacteria 118 1.18e-28   NR MEI8124812.1 2052176 g87486 i0 76.4 1.76953125 72 17 84.4 0 218 3 518 589 MEI8124812.1 thioredoxin domain-containing protein [Parachlamydiaceae bacterium] diamond 453 118 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales Parachlamydiaceae   Parachlamydiaceae bacterium
28369947 28369947 PRJNA382357_P_NODE_93566_length_249_cov_2.627660_g92827_i0 PRJNA382357 93566 249 2.62766 6.5428734 Chlamydiales bacterium STE3 1910938 Bacteria Bacteria 62 2.82e-9   NR KAF3361417.1 1910938 g92827 i0 59.1 0.975903614457831 44 18 53 0 192 61 25 68 KAF3361417.1 hypothetical protein PHSC3_002048 [Chlamydiales bacterium STE3] diamond 243 62 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Chlamydiales     Chlamydiales bacterium STE3
28401539 28401539 PRJNA382357_P_NODE_38626_length_368_cov_2.029316_g37887_i0 PRJNA382357 38626 368 2.029316 7.46788288 Parachlamydiaceae bacterium 2052176 Bacteria Bacteria 148 3.95e-41   NR HEV8052519.1 2052176 g37887 i0 86.8 0.619565217391304 76 10 62 0 2 229 150 225 HEV8052519.1 CocE/NonD family hydrolase [Parachlamydiaceae bacterium] diamond 228 148 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales Parachlamydiaceae   Parachlamydiaceae bacterium
28685913 28685913 PRJNA382357_P_NODE_17807_length_518_cov_2.673961_g17077_i0 PRJNA382357 17807 518 2.673961 13.85111798 Parachlamydiaceae bacterium 2052176 Bacteria Bacteria 191 1.28e-57   NR MFI0434905.1 2052176 g17077 i0 88.9 0.625482625482625 108 12 62.5 0 2 325 164 271 MFI0434905.1 TrmH family RNA methyltransferase [Parachlamydiaceae bacterium] diamond 324 191 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales Parachlamydiaceae   Parachlamydiaceae bacterium
29001822 29001822 PRJNA382357_P_NODE_157848_length_199_cov_4.072464_g157109_i0 PRJNA382357 157848 199 4.072464 8.10420336 Chlamydiota bacterium 2081524 Bacteria Bacteria 48.1 2.54e-4   NR NGX51188.1 2081524 g157109 i0 75.9 0.437185929648241 29 7 43.7 0 9 95 106 134 NGX51188.1 Lactococcin-G-processing and transport ATP-binding protein LagD [Chlamydiota bacterium] diamond 87 48.1 1 Bacteria PVC group Pseudomonadati Chlamydiota         Chlamydiota bacterium
29064741 29064741 PRJNA382357_P_NODE_73648_length_277_cov_1.101852_g72909_i0 PRJNA382357 73648 277 1.101852 3.05213004 Parachlamydiaceae bacterium 2052176 Bacteria Bacteria 79.7 4.26e-15   NR HEV8051552.1 2052176 g72909 i0 61.3 1.34296028880866 62 22 65 1 239 60 134 195 HEV8051552.1 ISAzo13 family transposase [Parachlamydiaceae bacterium] diamond 372 79.7 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales Parachlamydiaceae   Parachlamydiaceae bacterium
29506497 29506497 PRJNA382357_P_NODE_130210_length_214_cov_1.699346_g129471_i0 PRJNA382357 130210 214 1.699346 3.63660044 Candidatus Protochlamydia phocaeensis 1414722 Bacteria Bacteria 60.1 1.87e-8   NR WP_068470146.1 1414722 g129471 i0 61.4 1.85046728971963 44 17 61.7 0 13 144 281 324 WP_068470146.1 putative lipid II flippase FtsW [Candidatus Protochlamydia phocaeensis] diamond 396 60.1 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales Parachlamydiaceae Candidatus Protochlamydia Candidatus Protochlamydia phocaeensis
29759078 29759078 PRJNA382357_P_NODE_47811_length_335_cov_1.660584_g47072_i0 PRJNA382357 47811 335 1.660584 5.5629564 Chlamydiales bacterium 2047757 Bacteria Bacteria 119 9.579999999999999e-30   NR MFI5333660.1 2047757 g47072 i0 94.8 0.519402985074627 58 3 51.9 0 335 162 248 305 MFI5333660.1 polysaccharide biosynthesis/export family protein [Chlamydiales bacterium] diamond 174 119 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Chlamydiales     Chlamydiales bacterium
29776044 29776044 PRJNA382357_P_NODE_73531_length_277_cov_1.384259_g72792_i0 PRJNA382357 73531 277 1.384259 3.83439743 Bacteria 2 Bacteria Bacteria 70.9 7.19e-12   NR MEX1012499.1 2026802 g72792 i0 54.7 16.3862815884477 64 23 62.8 2 175 2 538 601 MEX1012499.1 glycoside hydrolase family 15 protein [Waddliaceae bacterium] diamond 4539 71.2 0.995786516853933 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales Waddliaceae   Waddliaceae bacterium
30074910 30074910 PRJNA382357_P_NODE_143712_length_207_cov_0.890411_g142973_i0 PRJNA382357 143712 207 0.890411 1.84315077 Chlamydiales bacterium 2047757 Bacteria Bacteria 87.8 1.69e-19   NR MBN9378548.1 2047757 g142973 i0 57.4 0.985507246376812 68 29 98.6 0 3 206 38 105 MBN9378548.1 class I SAM-dependent methyltransferase [Chlamydiales bacterium] diamond 204 87.8 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Chlamydiales     Chlamydiales bacterium
30154970 30154970 PRJNA382357_P_NODE_160532_length_194_cov_3.518797_g159793_i0 PRJNA382357 160532 194 3.518797 6.82646618 Parachlamydia 83551 Bacteria Bacteria 45.8 0.00159   NR MBA3958543.1 2052176 g159793 i0 77.4 1.91752577319588 31 7 47.9 0 93 1 435 465 MBA3958543.1 DNA repair protein RecN [Parachlamydiaceae bacterium] diamond 372 45.8 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales Parachlamydiaceae   Parachlamydiaceae bacterium
30264960 30264960 PRJNA382357_P_NODE_162712_length_190_cov_17.356589_g161973_i0 PRJNA382357 162712 190 17.356589 32.9775191 Chlamydiota bacterium 2081524 Bacteria Bacteria 77.8 3.32e-15   NR NNM43040.1 2081524 g161973 i0 86.8 0.6 38 5 60 0 4 117 2 39 NNM43040.1 hypothetical protein [Chlamydiota bacterium] diamond 114 77.8 1 Bacteria PVC group Pseudomonadati Chlamydiota         Chlamydiota bacterium
30296666 30296666 PRJNA382357_P_NODE_118272_length_224_cov_19.417178_g117533_i0 PRJNA382357 118272 224 19.417178 43.49447872 Chlamydiales bacterium 2047757 Bacteria Bacteria 63.9 9.2e-10   NR MDP1834592.1 2047757 g117533 i0 53.3 1.23214285714286 45 21 60.3 0 224 90 36 80 MDP1834592.1 citrate (Si)-synthase [Chlamydiales bacterium] diamond 276 63.9 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Chlamydiales     Chlamydiales bacterium
30485872 30485872 PRJNA382357_P_NODE_34053_length_389_cov_1.704268_g33314_i0 PRJNA382357 34053 389 1.704268 6.62960252 Chlamydiota bacterium 2081524 Bacteria Bacteria 69.3 8.95e-11   NR MES2123042.1 2081524 g33314 i0 43.5 0.709511568123393 92 46 68.6 3 60 326 333 421 MES2123042.1 collagen-like protein [Chlamydiota bacterium] diamond 276 69.3 1 Bacteria PVC group Pseudomonadati Chlamydiota         Chlamydiota bacterium
30580310 30580310 PRJNA382357_P_NODE_104313_length_237_cov_11.011364_g103574_i0 PRJNA382357 104313 237 11.011364 26.09693268 Chlamydiota bacterium 2081524 Bacteria Bacteria 96.7 3.6100000000000005e-21   NR NNM43626.1 2081524 g103574 i0 90.7 0.683544303797468 54 5 68.4 0 74 235 512 565 NNM43626.1 translation initiation factor IF-2 [Chlamydiota bacterium] diamond 162 96.7 1 Bacteria PVC group Pseudomonadati Chlamydiota         Chlamydiota bacterium
30723895 30723895 PRJNA382357_P_NODE_147994_length_205_cov_1.354167_g147255_i0 PRJNA382357 147994 205 1.354167 2.77604235 Pseudomonadati 3379134 Bacteria Bacteria 70.9 2.68e-12   NR CDZ81439.1 1444712 g147255 i0 69.1 1.60975609756098 55 17 80.5 0 39 203 622 676 CDZ81439.1 hypothetical protein BN1013_01975 [Candidatus Rubidus massiliensis] diamond 330 71.6 0.990223463687151 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Chlamydiales Chlamydiaceae Candidatus Rubidus Candidatus Rubidus massiliensis
31008350 31008350 PRJNA382357_P_NODE_66374_length_290_cov_0.986900_g65635_i0 PRJNA382357 66374 290 0.9869 2.86201 Bacteria 2 Bacteria Bacteria 92.4 2.29e-19   NR MBN9378264.1 2047757 g65635 i0 62.5 5.16206896551724 64 24 66.2 0 97 288 74 137 MBN9378264.1 DNA ligase D [Chlamydiales bacterium] diamond 1497 93.2 0.991416309012876 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Chlamydiales     Chlamydiales bacterium
31781748 31781748 PRJNA382357_P_NODE_92317_length_251_cov_1.105263_g91578_i0 PRJNA382357 92317 251 1.105263 2.77421013 Parachlamydiaceae bacterium 2052176 Bacteria Bacteria 77.4 2.34e-14   NR MFI0434249.1 2052176 g91578 i0 73.6 1.26693227091633 53 14 63.3 0 159 1 313 365 MFI0434249.1 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Parachlamydiaceae bacterium] diamond 318 77.4 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales Parachlamydiaceae   Parachlamydiaceae bacterium
32034997 32034997 PRJNA382357_P_NODE_79118_length_268_cov_1.637681_g78379_i0 PRJNA382357 79118 268 1.637681 4.38898508 Candidatus Rhabdochlamydia porcellionis 225148 Bacteria Bacteria 63.2 3.18e-9   NR WP_194845061.1 225148 g78379 i0 51.4 0.828358208955224 74 35 81.7 1 12 230 97 170 WP_194845061.1 NEL-type E3 ubiquitin ligase domain-containing protein [Candidatus Rhabdochlamydia porcellionis] diamond 222 63.2 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales Candidatus Rhabdochlamydiaceae Candidatus Rhabdochlamydia Candidatus Rhabdochlamydia porcellionis
32083541 32083541 PRJNA382357_P_NODE_36858_length_376_cov_1.228571_g36119_i0 PRJNA382357 36858 376 1.228571 4.61942696 Pseudomonadati 3379134 Bacteria Bacteria 132 3.2400000000000004e-33   NR WP_053331965.1 340071 g36119 i0 57.1 2.50531914893617 105 45 83.8 0 317 3 431 535 WP_053331965.1 tetratricopeptide repeat protein [Criblamydia sequanensis] diamond 942 132 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales Candidatus Criblamydiaceae Candidatus Criblamydia Candidatus Criblamydia sequanensis
32414761 32414761 PRJNA382357_P_NODE_155579_length_202_cov_0.921986_g154840_i0 PRJNA382357 155579 202 0.921986 1.86241172 Chlamydiales bacterium 2047757 Bacteria Bacteria 99.8 5.29e-23   NR MBX9744938.1 2047757 g154840 i0 74.2 1.96039603960396 66 17 98 0 200 3 81 146 MBX9744938.1 hypothetical protein [Chlamydiales bacterium] diamond 396 99.8 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Chlamydiales     Chlamydiales bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;