RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

10 rows where bioproject = "PRJNA382357", tax_clade = "PVC group" and tax_phylum = "Candidatus Omnitrophota"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Candidatus Omnitrophota · 10 ✖

tax_kingdom 1

tax_clade 1

  • PVC group · 10 ✖

bioproject 1

  • PRJNA382357 · 10 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
21477302 21477302 PRJNA382357_P_NODE_95157_length_247_cov_5.150538_g94418_i0 PRJNA382357 95157 247 5.150538 12.72182886 Candidatus Omnitrophota bacterium 2035772 Bacteria Bacteria 73.6 7.62e-15   NR MCG3176942.1 2035772 g94418 i0 96.9 0.388663967611336 32 1 38.9 0 180 85 1 32 MCG3176942.1 hypothetical protein [Candidatus Omnitrophota bacterium] diamond 96 73.6 1 Bacteria PVC group Pseudomonadati Candidatus Omnitrophota         Candidatus Omnitrophota bacterium
27137879 27137879 PRJNA382357_P_NODE_74662_length_275_cov_2.439252_g73923_i0 PRJNA382357 74662 275 2.439252 6.707943 Candidatus Omnitrophota bacterium 2035772 Bacteria Bacteria 58.9 1.12e-7   NR HOU36507.1 2035772 g73923 i0 58 1.63636363636364 50 21 54.5 0 157 8 578 627 HOU36507.1 hypothetical protein [Candidatus Omnitrophota bacterium] diamond 450 58.9 1 Bacteria PVC group Pseudomonadati Candidatus Omnitrophota         Candidatus Omnitrophota bacterium
27359767 27359767 PRJNA382357_P_NODE_65043_length_292_cov_3.441558_g64304_i0 PRJNA382357 65043 292 3.441558 10.04934936 Candidatus Omnitrophota bacterium 2035772 Bacteria Bacteria 100 8.97e-24   NR HAJ57042.1 2035772 g64304 i0 63.1 4.71575342465753 65 24 66.8 0 290 96 89 153 HAJ57042.1 prolipoprotein diacylglyceryl transferase [Candidatus Omnitrophota bacterium] diamond 1377 100 1 Bacteria PVC group Pseudomonadati Candidatus Omnitrophota         Candidatus Omnitrophota bacterium
27391327 27391327 PRJNA382357_P_NODE_19383_length_499_cov_5.958904_g18650_i0 PRJNA382357 19383 499 5.958904 29.73493096 Candidatus Omnitrophota bacterium 2035772 Bacteria Bacteria 114 6.02e-26   NR MBI2095063.1 2035772 g18650 i0 50.5 0.619238476953908 103 51 61.9 0 186 494 564 666 MBI2095063.1 DNA internalization-related competence protein ComEC/Rec2 [Candidatus Omnitrophota bacterium] diamond 309 114 1 Bacteria PVC group Pseudomonadati Candidatus Omnitrophota         Candidatus Omnitrophota bacterium
29081626 29081626 PRJNA382357_P_NODE_35608_length_381_cov_3.762500_g34869_i0 PRJNA382357 35608 381 3.7625 14.335125 Pseudomonadati 3379134 Bacteria Bacteria 199 1.6099999999999998e-56   NR PIQ84665.1 1974749 g34869 i0 84.6 2.47244094488189 104 16 81.9 0 365 54 555 658 PIQ84665.1 MAG: hypothetical protein COV75_01110, partial [Candidatus Omnitrophica bacterium CG11_big_fil_rev_8_21_14_0_20_63_9] diamond 942 201 0.990049751243781 Bacteria PVC group Pseudomonadati Candidatus Omnitrophota         Candidatus Omnitrophica bacterium CG11_big_fil_rev_8_21_14_0_20_63_9
29695730 29695730 PRJNA382357_P_NODE_79910_length_267_cov_1.262136_g79171_i0 PRJNA382357 79910 267 1.262136 3.36990312 Candidatus Omnitrophota bacterium 2035772 Bacteria Bacteria 65.9 6.38e-11   NR MBU1125366.1 2035772 g79171 i0 73.3 1.02247191011236 45 12 50.6 0 136 2 36 80 MBU1125366.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD [Candidatus Omnitrophota bacterium] diamond 273 65.9 1 Bacteria PVC group Pseudomonadati Candidatus Omnitrophota         Candidatus Omnitrophota bacterium
31655200 31655200 PRJNA382357_P_NODE_91677_length_251_cov_463.894737_g90938_i0 PRJNA382357 91677 251 463.894737 1164.37578987 Candidatus Omnitrophota bacterium 2035772 Bacteria Bacteria 42.7 0.0316   NR MCG2704430.1 2035772 g90938 i0 37.9 0.693227091633466 58 31 63.3 1 48 206 66 123 MCG2704430.1 flavodoxin family protein [Candidatus Omnitrophota bacterium] diamond 174 42.7 1 Bacteria PVC group Pseudomonadati Candidatus Omnitrophota         Candidatus Omnitrophota bacterium
31718555 31718555 PRJNA382357_P_NODE_114157_length_228_cov_1.610778_g113418_i0 PRJNA382357 114157 228 1.610778 3.67257384 Candidatus Omnitrophota bacterium 2035772 Bacteria Bacteria 53.1 1.74e-6   NR MBI3306512.1 2035772 g113418 i0 54.8 1.42105263157895 62 27 81.6 1 1 186 49 109 MBI3306512.1 50S ribosomal protein L9 [Candidatus Omnitrophota bacterium] diamond 324 53.1 1 Bacteria PVC group Pseudomonadati Candidatus Omnitrophota         Candidatus Omnitrophota bacterium
32446537 32446537 PRJNA382357_P_NODE_47779_length_335_cov_2.007299_g47040_i0 PRJNA382357 47779 335 2.007299 6.72445165 Candidatus Omnitrophota bacterium 2035772 Bacteria Bacteria 95.9 4.6e-21   NR MDD4899485.1 2035772 g47040 i0 75 0.501492537313433 56 14 50.1 0 168 1 233 288 MDD4899485.1 iron ABC transporter permease [Candidatus Omnitrophota bacterium] diamond 168 95.9 1 Bacteria PVC group Pseudomonadati Candidatus Omnitrophota         Candidatus Omnitrophota bacterium
32824742 32824742 PRJNA382357_P_NODE_169140_length_174_cov_4.663717_g168401_i0 PRJNA382357 169140 174 4.663717 8.11486758 Candidatus Omnitrophota bacterium 2035772 Bacteria Bacteria 45.4 0.0017   NR MDD4293891.1 2035772 g168401 i0 52.4 4.13793103448276 42 18 72.4 1 31 156 542 581 MDD4293891.1 elongation factor G [Candidatus Omnitrophota bacterium] diamond 720 45.4 1 Bacteria PVC group Pseudomonadati Candidatus Omnitrophota         Candidatus Omnitrophota bacterium

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;