RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA382357", tax_clade = "Amoebozoa" and tax_phylum = "Tubulinea"

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tax_superkingdom 1

tax_phylum 1

  • Tubulinea · 2 ✖

tax_clade 1

  • Amoebozoa · 2 ✖

bioproject 1

  • PRJNA382357 · 2 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
9331589 9331589 PRJNA382357_P_NODE_24468_length_451_cov_2.317949_g23731_i0 PRJNA382357 24468 451 2.317949 10.45394999 Hyalosphenia papilio 318532 Tubulinea other_Eukaryota 702 0   NTclustered gi|421976353|gb|JQ519493.1| 318532 g23731 i0 98.98 67.9955654101996 392 4 99 0 7 398 396 5 Hyalosphenia papilio clone JG11.46_f5 elongation factor 2 alpha gene, partial cds blastn 30666 702 1 Eukaryota Amoebozoa   Tubulinea Elardia Arcellinida Hyalospheniidae Hyalosphenia Hyalosphenia papilio
11882805 11882805 PRJNA382357_P_NODE_61570_length_299_cov_1.987395_g60831_i0 PRJNA382357 61570 299 1.987395 5.94231105 Hyalosphenia papilio 318532 Tubulinea other_Eukaryota 553 6.25e-153   NTclustered gi|421976353|gb|JQ519493.1| 318532 g60831 i0 100 46.5284280936455 299 0 100 0 1 299 403 701 Hyalosphenia papilio clone JG11.46_f5 elongation factor 2 alpha gene, partial cds blastn 13912 553 1 Eukaryota Amoebozoa   Tubulinea Elardia Arcellinida Hyalospheniidae Hyalosphenia Hyalosphenia papilio

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;