RNAquarium Metadata Server
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contig_metadata

5 rows where bioproject = "PRJNA380660", tax_phylum = "Myxococcota" and tax_superkingdom = "Bacteria"

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tax_superkingdom 1

  • Bacteria · 5 ✖

tax_phylum 1

  • Myxococcota · 5 ✖

tax_kingdom 1

bioproject 1

  • PRJNA380660 · 5 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27137788 27137788 PRJNA380660_P_NODE_1742_length_643_cov_2.245928_g1419_i0 PRJNA380660 1742 643 2.245928 14.44131704 Enhygromyxa sp. 2666105 Bacteria Bacteria 169 4.3399999999999996e-47   NR HVH99620.1 2666105 g1419 i0 36.9 1.18973561430793 255 117 98.9 5 7 642 97 350 HVH99620.1 cellulase family glycosylhydrolase [Enhygromyxa sp.] diamond 765 169 1 Bacteria   Pseudomonadati Myxococcota   Nannocystales Nannocystaceae Enhygromyxa Enhygromyxa sp.
27801689 27801689 PRJNA380660_P_NODE_1664_length_655_cov_14.396166_g1346_i0 PRJNA380660 1664 655 14.396166 94.2948873 Myxococcales bacterium 2026763 Bacteria Bacteria 62 2.33e-7   NR MBK9070054.1 2026763 g1346 i0 36.7 0.549618320610687 120 52 48.5 7 23 340 219 328 MBK9070054.1 PPC domain-containing protein [Myxococcales bacterium] diamond 360 62 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales     Myxococcales bacterium
27944920 27944920 PRJNA380660_P_NODE_7205_length_271_cov_1.528926_g6805_i0 PRJNA380660 7205 271 1.528926 4.14338946 root 1 Root_unresolved Root_unresolved 57 4.98e-7   NR HRI66042.1 57 g6805 i0 55.1 3.83025830258303 49 20 54.2 1 266 120 1108 1154 HRI66042.1 hypothetical protein [Polyangium sp.] diamond 1038 57.4 0.993031358885017 Bacteria   Pseudomonadati Myxococcota   Polyangiales Polyangiaceae Polyangium Polyangium sp.
31054768 31054768 PRJNA380660_P_NODE_10375_length_201_cov_1.877907_g9975_i0 PRJNA380660 10375 201 1.877907 3.77459307 Myxococcales bacterium 2026763 Bacteria Bacteria 42.4 0.0192   NR HZX64023.1 2026763 g9975 i0 39 0.880597014925373 59 34 86.6 2 200 27 77 134 HZX64023.1 cysteine rich repeat-containing protein [Myxococcales bacterium] diamond 177 42.4 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales     Myxococcales bacterium
32256733 32256733 PRJNA380660_P_NODE_1718_length_646_cov_10.205835_g1397_i0 PRJNA380660 1718 646 10.205835 65.9296941 Myxococcales bacterium 2026763 Bacteria Bacteria 65.1 1.88e-8   NR MBK9070054.1 2026763 g1397 i0 38.3 0.53405572755418 115 51 45 7 624 334 219 331 MBK9070054.1 PPC domain-containing protein [Myxococcales bacterium] diamond 345 65.1 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales     Myxococcales bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;