RNAquarium Metadata Server
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contig_metadata

6 rows where bioproject = "PRJNA380660" and tax_phylum = "Mollusca"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Mollusca · 6 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA380660 · 6 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1677014 1677014 PRJNA380660_P_NODE_5462_length_333_cov_5.125000_g5063_i0 PRJNA380660 5462 333 5.125 17.06625 Bradybaena similaris 145626 Mollusca Mollusca 52.8 0.031   NTclustered gi|2912994531|dbj|AP039599.1| 145626 g5063 i0 100 0.0840840840840841 28 0 8 0 279 306 5901013 5900986 Bradybaena similaris mixture of YIPCMo001421 and YIPCMo001540 DNA, chromosome 18, sequence blastn 28 52.8 1 Eukaryota Opisthokonta Metazoa Mollusca Gastropoda Stylommatophora Camaenidae Bradybaena Bradybaena similaris
8055510 8055510 PRJNA380660_P_NODE_3987_length_408_cov_2.564644_g3594_i0 PRJNA380660 3987 408 2.564644 10.46374752 Bradybaena similaris 145626 Mollusca Mollusca 54.7 0.011   NTclustered gi|2913001816|dbj|AP039609.1| 145626 g3594 i0 100 0.071078431372549 29 0 7 0 51 79 7018763 7018735 Bradybaena similaris mixture of YIPCMo001421 and YIPCMo001540 DNA, chromosome 28, sequence blastn 29 54.7 1 Eukaryota Opisthokonta Metazoa Mollusca Gastropoda Stylommatophora Camaenidae Bradybaena Bradybaena similaris
20803750 20803750 PRJNA380660_P_NODE_9777_length_211_cov_1.736264_g9377_i0 PRJNA380660 9777 211 1.736264 3.66351704 Bradybaena similaris 145626 Mollusca Mollusca 56.5 0.001   NTclustered gi|2912987826|dbj|AP039592.1| 145626 g9377 i0 97.059 0.161137440758294 34 0 16 1 56 88 10695165 10695198 Bradybaena similaris mixture of YIPCMo001421 and YIPCMo001540 DNA, chromosome 11, sequence blastn 34 56.5 1 Eukaryota Opisthokonta Metazoa Mollusca Gastropoda Stylommatophora Camaenidae Bradybaena Bradybaena similaris
22751062 22751062 PRJNA380660_P_NODE_7658_length_257_cov_2.837719_g7258_i0 PRJNA380660 7658 257 2.837719 7.29293783 Metazoa 33208 Mollusca Mollusca 259 1.28e-64   NTclustered gi|676464446|ref|XM_009058677.1| 225164 g7258 i0 85.214 246.575875486381 257 33 99 4 4 257 489 235 Lottia gigantea hypothetical protein partial mRNA blastn 63370 259 1 Eukaryota Opisthokonta Metazoa Mollusca Gastropoda   Lottiidae Lottia Lottia gigantea
28418697 28418697 PRJNA380660_P_NODE_8946_length_226_cov_2.345178_g8546_i0 PRJNA380660 8946 226 2.345178 5.30010228 Metazoa 33208 Mollusca Mollusca 73.2 6.78e-15   NR XP_045172016.1 6596 g8546 i0 54.7 1.6858407079646 64 25 85 1 224 33 17 76 XP_045172016.1 mitochondrial import inner membrane translocase subunit Tim10-like [Mercenaria mercenaria] diamond 381 73.6 0.994565217391304 Eukaryota Opisthokonta Metazoa Mollusca Bivalvia Venerida Veneridae Mercenaria Mercenaria mercenaria
28875052 28875052 PRJNA380660_P_NODE_228_length_1720_cov_6.052632_g165_i0 PRJNA380660 228 1720 6.052632 104.1052704 Physella acuta 109671 Mollusca Mollusca 53.5 0.00352   NR XP_059169630.1 109671 g165 i0 25.4 0.226744186046512 130 83 22 5 1027 1404 1432 1551 XP_059169630.1 NFX1-type zinc finger-containing protein 1-like [Physella acuta] diamond 390 53.5 1 Eukaryota Opisthokonta Metazoa Mollusca Gastropoda   Physidae Physella Physella acuta

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;