RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

7 rows where bioproject = "PRJNA380660" and tax_phylum = "Heterolobosea"

✎ View and edit SQL

This data as json, CSV (advanced)

analysis 2

tax_superkingdom 1

tax_phylum 1

  • Heterolobosea · 7 ✖

tax_clade 1

bioproject 1

  • PRJNA380660 · 7 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1074284 1074284 PRJNA380660_P_NODE_5341_length_338_cov_3.809061_g4942_i0 PRJNA380660 5341 338 3.809061 12.87462618 Naegleria 5761 Heterolobosea other_Eukaryota 614 3.2499999999999993e-171   NTclustered gi|2618963742|gb|OR769034.1| 5762 g4942 i0 99.41 21.1804733727811 339 1 100 1 1 338 3996 3658 Naegleria gruberi strain NEG-M rDNA-containing extrachromosomal element genomic sequence; and 18S small subunit ribosomal RNA gene, internal transcribed spacer 1, 5.8S ribosomal RNA gene, internal transcribed spacer 2, and 28S large subunit ribosomal RNA gene, complete sequence blastn 7159 614 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria gruberi
11277454 11277454 PRJNA380660_P_NODE_9329_length_219_cov_2.047368_g8929_i0 PRJNA380660 9329 219 2.047368 4.48373592 Naegleria 5761 Heterolobosea other_Eukaryota 364 2.19e-96   NTclustered gi|2476253407|gb|OQ627480.1| 51634 g8929 i0 99.5 10.958904109589 200 1 91 0 10 209 4343 4144 Naegleria australiensis strain PP397 rDNA-containing extrachromosomal element genomic sequence; small subunit ribosomal RNA gene, internal transcribed spacer 1, 5.8S ribosomal RNA gene, internal transcribed spacer 2, and large subunit ribosomal RNA gene, complete sequence; and non-ribosomal sequence blastn 2400 364 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria australiensis
18925716 18925716 PRJNA380660_P_NODE_4395_length_385_cov_3.384831_g3999_i0 PRJNA380660 4395 385 3.384831 13.03159935 Naegleria 5761 Heterolobosea other_Eukaryota 702 0   NTclustered gi|2618963742|gb|OR769034.1| 5762 g3999 i0 99.739 65.3038961038961 383 1 99 0 1 383 3415 3033 Naegleria gruberi strain NEG-M rDNA-containing extrachromosomal element genomic sequence; and 18S small subunit ribosomal RNA gene, internal transcribed spacer 1, 5.8S ribosomal RNA gene, internal transcribed spacer 2, and 28S large subunit ribosomal RNA gene, complete sequence blastn 25142 708 0.991525423728814 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria gruberi
18925724 18925724 PRJNA380660_P_NODE_7495_length_263_cov_1.858974_g7095_i0 PRJNA380660 7495 263 1.858974 4.88910162 Naegleria 5761 Heterolobosea other_Eukaryota 143 1.38e-29   NTclustered gi|2618963742|gb|OR769034.1| 5762 g7095 i0 87.805 27.148288973384 123 14 47 1 132 254 5057 5178 Naegleria gruberi strain NEG-M rDNA-containing extrachromosomal element genomic sequence; and 18S small subunit ribosomal RNA gene, internal transcribed spacer 1, 5.8S ribosomal RNA gene, internal transcribed spacer 2, and 28S large subunit ribosomal RNA gene, complete sequence blastn 7140 143 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria gruberi
24025995 24025995 PRJNA380660_P_NODE_1299_length_755_cov_9.033058_g1018_i0 PRJNA380660 1299 755 9.033058 68.1995879 Naegleria 5761 Heterolobosea other_Eukaryota 771 0   NTclustered gi|32479131|gb|AY321362.1| 51634 g1018 i0 99.762 98.594701986755 420 1 100 0 1 420 1835 1416 Naegleria australiensis isolate TT 18S ribosomal RNA gene, partial sequence blastn 74439 771 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria australiensis
26790286 26790286 PRJNA380660_P_NODE_4581_length_375_cov_3.046243_g4184_i0 PRJNA380660 4581 375 3.046243 11.42341125 Naegleria gruberi 5762 Heterolobosea other_Eukaryota 77.4 1.2e-13   NR XP_002671276.1 5762 g4184 i0 48.4 1.008 126 60 99.2 4 374 3 10 132 XP_002671276.1 uncharacterized protein NAEGRDRAFT_53059 [Naegleria gruberi] diamond 378 77.4 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria gruberi
32558445 32558445 PRJNA380660_P_NODE_11139_length_187_cov_1.626582_g10739_i0 PRJNA380660 11139 187 1.626582 3.04170834 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 84 2.05e-17   NR XP_044544572.1 51637 g10739 i0 58.1 5.96791443850267 62 26 99.5 0 187 2 233 294 XP_044544572.1 uncharacterized protein C9374_010021 [Naegleria lovaniensis] diamond 1116 84.7 0.991735537190083 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria lovaniensis

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;