RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA380660", tax_phylum = "Chloroflexota" and tax_superkingdom = "Bacteria"

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tax_superkingdom 1

  • Bacteria · 3 ✖

tax_phylum 1

  • Chloroflexota · 3 ✖

tax_kingdom 1

bioproject 1

  • PRJNA380660 · 3 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
14430966 14430966 PRJNA380660_P_NODE_1032_length_850_cov_2.555420_g785_i0 PRJNA380660 1032 850 2.55542 21.72107 Ktedonobacteria bacterium brp13 2717365 Bacteria Bacteria 196 7.58e-59   NR BCL82548.1 2717365 g785 i0 47.6 0.748235294117647 212 90 74.8 4 88 723 1 191 BCL82548.1 superoxide dismutase [Ktedonobacteria bacterium brp13] diamond 636 196 1 Bacteria   Bacillati Chloroflexota Ktedonobacteria       Ktedonobacteria bacterium brp13
28748766 28748766 PRJNA380660_P_NODE_8967_length_226_cov_1.822335_g8567_i0 PRJNA380660 8967 226 1.822335 4.1184771 Chloroflexota bacterium 2026724 Bacteria Bacteria 66.6 2.72e-12   NR NLE46672.1 2026724 g8567 i0 48.6 1.72566371681416 70 35 91.6 1 224 18 21 90 NLE46672.1 30S ribosomal protein S17 [Chloroflexota bacterium] diamond 390 66.6 1 Bacteria   Bacillati Chloroflexota         Chloroflexota bacterium
30043353 30043353 PRJNA380660_P_NODE_9751_length_211_cov_2.648352_g9351_i0 PRJNA380660 9751 211 2.648352 5.58802272 Caldilineaceae bacterium 2614250 Bacteria Bacteria 73.2 3.4e-13   NR MEZ4659335.1 2614250 g9351 i0 51.4 1.02369668246445 72 31 99.5 2 210 1 188 257 MEZ4659335.1 hypothetical protein [Caldilineaceae bacterium] diamond 216 73.2 1 Bacteria   Bacillati Chloroflexota Caldilineae Caldilineales Caldilineaceae   Caldilineaceae bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;