RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJNA380660", tax_phylum = "Acidobacteriota" and tax_superkingdom = "Bacteria"

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tax_superkingdom 1

  • Bacteria · 4 ✖

tax_phylum 1

  • Acidobacteriota · 4 ✖

tax_kingdom 1

bioproject 1

  • PRJNA380660 · 4 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
8055499 8055499 PRJNA380660_P_NODE_1807_length_632_cov_4.265340_g1483_i0 PRJNA380660 1807 632 4.26534 26.9569488 uncultured Acidobacteriota bacterium 171953 Bacteria Bacteria 736 0   NTclustered gi|2874253885|emb|OY970060.1| 171953 g1483 i0 88.585 81.9414556962025 622 49 97 14 19 632 4840785 4840178 MAG: uncultured Acidobacteriota bacterium isolate MFD01916.bin.c.4 genome assembly, chromosome: 1 blastn 51787 736 1 Bacteria   Pseudomonadati Acidobacteriota         uncultured Acidobacteriota bacterium
10605996 10605996 PRJNA380660_P_NODE_2529_length_531_cov_3.541833_g2169_i0 PRJNA380660 2529 531 3.541833 18.80713323 Acidobacteriota bacterium 1978231 Bacteria Bacteria 628 1.8899999999999998e-175   NTclustered gi|1958098837|gb|CP065005.1| 1978231 g2169 i0 88.06 86.1544256120527 536 56 100 8 1 531 4650071 4649539 Acidobacteria bacterium isolate Kalu_18-Q3-R12-55_MAXAC.198_cln chromosome, complete genome blastn 45748 628 1 Bacteria   Pseudomonadati Acidobacteriota         Acidobacteriota bacterium
15102079 15102079 PRJNA380660_P_NODE_6572_length_291_cov_9.786260_g6172_i0 PRJNA380660 6572 291 9.78626 28.4780166 Luteitalea 2004797 Bacteria Bacteria 521 1.7099999999999995e-143   NTclustered gi|1016914409|gb|CP015136.1| 1855912 g6172 i0 98.969 121.965635738832 291 3 100 0 1 291 654109 654399 Luteitalea pratensis strain DSM 100886 chromosome, complete genome blastn 35492 521 1 Bacteria   Pseudomonadati Acidobacteriota Vicinamibacteria Vicinamibacterales Vicinamibacteraceae Luteitalea Luteitalea pratensis
20803734 20803734 PRJNA380660_P_NODE_6637_length_289_cov_7.684615_g6237_i0 PRJNA380660 6637 289 7.684615 22.20853735 Acidobacteriota bacterium 1978231 Bacteria Bacteria 455 1.7400000000000003e-123   NTclustered gi|1958085512|gb|CP065000.1| 1978231 g6237 i0 95.156 298.048442906574 289 13 100 1 1 289 3299286 3298999 Acidobacteria bacterium isolate Kalu_18-Q3-R12-55_MAXAC.078_cln chromosome, complete genome blastn 86136 455 1 Bacteria   Pseudomonadati Acidobacteriota         Acidobacteriota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;