RNAquarium Metadata Server
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contig_metadata

6 rows where bioproject = "PRJNA380416" and tax_phylum = "Heterolobosea"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Heterolobosea · 6 ✖

tax_clade 1

bioproject 1

  • PRJNA380416 · 6 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2952657 2952657 PRJNA380416_P_NODE_7783_length_205_cov_1.358974_g7636_i0 PRJNA380416 7783 205 1.358974 2.7858967 Allovahlkampfia sp. 1874883 Heterolobosea other_Eukaryota 368 1.57e-97   NTclustered gi|2651357779|gb|PP174295.1| 1874883 g7636 i0 99.024 3.19024390243902 205 2 100 0 1 205 3549 3345 Allovahlkampfia sp. isolate P10 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 654 368 1 Eukaryota Discoba   Heterolobosea     Acrasidae Allovahlkampfia Allovahlkampfia sp.
4229209 4229209 PRJNA380416_P_NODE_9704_length_183_cov_1.238806_g9557_i0 PRJNA380416 9704 183 1.238806 2.26701498 Allovahlkampfia sp. PKD 2011a 1217110 Heterolobosea other_Eukaryota 327 2.31e-85   NTclustered gi|399764157|gb|JQ271668.1| 1217110 g9557 i0 98.907 23.3169398907104 183 2 100 0 1 183 297 115 Allovahlkampfia sp. PKD 2011a strain 4165 18S ribosomal RNA gene, partial sequence blastn 4267 327 1 Eukaryota Discoba   Heterolobosea     Acrasidae Allovahlkampfia Allovahlkampfia sp. PKD 2011a
22078545 22078545 PRJNA380416_P_NODE_12758_length_164_cov_0.886957_g12611_i0 PRJNA380416 12758 164 0.886957 1.45460948 Naegleria 5761 Heterolobosea other_Eukaryota 95.5 6.81e-23   NR XP_044556203.1 5763 g12611 i0 81.5 3.95121951219512 54 10 98.8 0 164 3 45 98 XP_044556203.1 uncharacterized protein FDP41_010219 [Naegleria fowleri] diamond 648 95.5 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria fowleri
24628322 24628322 PRJNA380416_P_NODE_6880_length_219_cov_1.111765_g6733_i0 PRJNA380416 6880 219 1.111765 2.43476535 Allovahlkampfia sp. 1874883 Heterolobosea other_Eukaryota 361 2.83e-95   NTclustered gi|2651357779|gb|PP174295.1| 1874883 g6733 i0 96.347 6.64383561643836 219 8 100 0 1 219 2216 1998 Allovahlkampfia sp. isolate P10 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 1455 361 1 Eukaryota Discoba   Heterolobosea     Acrasidae Allovahlkampfia Allovahlkampfia sp.
26758385 26758385 PRJNA380416_P_NODE_12241_length_165_cov_0.879310_g12094_i0 PRJNA380416 12241 165 0.87931 1.4508615 Acrasis kona 1008807 Heterolobosea other_Eukaryota 51.6 9.54e-6   NR KAL0482923.1 1008807 g12094 i0 45.6 1.03636363636364 57 28 98.2 1 3 164 817 873 KAL0482923.1 acetyl-CoA carboxylase [Acrasis kona] diamond 171 51.6 1 Eukaryota Discoba   Heterolobosea     Acrasidae Acrasis Acrasis kona
27959383 27959383 PRJNA380416_P_NODE_12125_length_165_cov_0.879310_g11978_i0 PRJNA380416 12125 165 0.87931 1.4508615 Naegleria lovaniensis 51637 Heterolobosea other_Eukaryota 91.3 1.06e-19   NR XP_044548617.1 51637 g11978 i0 72.7 1 55 14 98.2 1 165 4 222 276 XP_044548617.1 uncharacterized protein C9374_004905 [Naegleria lovaniensis] diamond 165 91.3 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria lovaniensis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;