RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA380416", tax_phylum = "Bdellovibrionota" and tax_superkingdom = "Bacteria"

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analysis 2

tax_superkingdom 1

  • Bacteria · 2 ✖

tax_phylum 1

  • Bdellovibrionota · 2 ✖

tax_kingdom 1

bioproject 1

  • PRJNA380416 · 2 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
10605763 10605763 PRJNA380416_P_NODE_12269_length_165_cov_0.879310_g12122_i0 PRJNA380416 12269 165 0.87931 1.4508615 Bdellovibrio sp. HCB-162 3394234 Bacteria Bacteria 169 1.31e-37   NTclustered gi|2898207634|gb|CP178861.1| 3394234 g12122 i0 85.276 0.987878787878788 163 24 99 0 1 163 934309 934147 Bdellovibrio sp. HCB-162 chromosome, complete genome blastn 163 169 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae Bdellovibrio Bdellovibrio sp. HCB-162
32414716 32414716 PRJNA380416_P_NODE_8559_length_195_cov_1.397260_g8412_i0 PRJNA380416 8559 195 1.39726 2.724657 Bdellovibrionales bacterium 2053517 Bacteria Bacteria 126 7.649999999999998e-35   NR MBX9767865.1 2053517 g8412 i0 89.2 1 65 7 100 0 195 1 105 169 MBX9767865.1 hypothetical protein [Bdellovibrionales bacterium] diamond 195 126 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales     Bdellovibrionales bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;