RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

9 rows where bioproject = "PRJNA380416" and tax_phylum = "Bacillariophyta"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Bacillariophyta · 9 ✖

tax_clade 1

bioproject 1

  • PRJNA380416 · 9 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
18253672 18253672 PRJNA380416_P_NODE_3955_length_300_cov_1.215139_g3808_i0 PRJNA380416 3955 300 1.215139 3.645417 root 1 Root_unresolved Root_unresolved 162 2.65e-47   NR CAJ1931814.1 2856 g3808 i0 75.8 14.88 99 24 99 0 297 1 29 127 CAJ1931814.1 unnamed protein product [Cylindrotheca closterium] diamond 4464 163 0.993865030674847 Eukaryota Sar   Bacillariophyta Bacillariophyceae Bacillariales Bacillariaceae Cylindrotheca Cylindrotheca closterium
26980021 26980021 PRJNA380416_P_NODE_5122_length_257_cov_0.846154_g4975_i0 PRJNA380416 5122 257 0.846154 2.17461578 Seminavis robusta 568900 SAR_Eukaryotes SAR_Eukaryotes 57 2.47e-7   NR CAB9520060.1 568900 g4975 i0 59.5 0.431906614785992 37 15 43.2 0 120 10 3 39 CAB9520060.1 domain protein [Seminavis robusta] diamond 111 57 1 Eukaryota Sar   Bacillariophyta Bacillariophyceae Naviculales Naviculaceae Seminavis Seminavis robusta
29411733 29411733 PRJNA380416_P_NODE_9189_length_188_cov_1.467626_g9042_i0 PRJNA380416 9189 188 1.467626 2.75913688 Phaeodactylum tricornutum 2850 SAR_Eukaryotes SAR_Eukaryotes 52.4 1.15e-6   NR AID23596.1 2850 g9042 i0 42.6 0.973404255319149 61 35 97.3 0 4 186 50 110 AID23596.1 putative voltage-dependent anion-selective channel protein, partial [Phaeodactylum tricornutum] diamond 183 52.4 1 Eukaryota Sar   Bacillariophyta Bacillariophyceae Naviculales Phaeodactylaceae Phaeodactylum Phaeodactylum tricornutum
29758989 29758989 PRJNA380416_P_NODE_12551_length_164_cov_0.886957_g12404_i0 PRJNA380416 12551 164 0.886957 1.45460948 Thalassiosira oceanica 159749 SAR_Eukaryotes SAR_Eukaryotes 48.1 3.06e-5   NR EJK49979.1 159749 g12404 i0 47.9 7.3719512195122 48 25 87.8 0 164 21 22 69 EJK49979.1 hypothetical protein THAOC_31089 [Thalassiosira oceanica] diamond 1209 48.1 1 Eukaryota Sar   Bacillariophyta Coscinodiscophyceae Thalassiosirales Thalassiosiraceae Thalassiosira Thalassiosira oceanica
29853948 29853948 PRJNA380416_P_NODE_7271_length_213_cov_0.932927_g7124_i0 PRJNA380416 7271 213 0.932927 1.98713451 Skeletonema marinoi 267567 SAR_Eukaryotes SAR_Eukaryotes 44.3 0.0071   NR KAK1735154.1 267567 g7124 i0 42.6 0.661971830985915 47 26 64.8 1 209 72 509 555 KAK1735154.1 hypothetical protein QTG54_014220 [Skeletonema marinoi] diamond 141 44.3 1 Eukaryota Sar   Bacillariophyta Coscinodiscophyceae Thalassiosirales Skeletonemataceae Skeletonema Skeletonema marinoi
30675194 30675194 PRJNA380416_P_NODE_5333_length_252_cov_1.004926_g5186_i0 PRJNA380416 5333 252 1.004926 2.53241352 Cyclostephanos tholiformis 382380 SAR_Eukaryotes SAR_Eukaryotes 101 1.05e-22   NR KAL3808413.1 382380 g5186 i0 63.6 1.83333333333333 77 28 91.7 0 251 21 633 709 KAL3808413.1 hypothetical protein ACHAXA_001350 [Cyclostephanos tholiformis] diamond 462 101 1 Eukaryota Sar   Bacillariophyta Coscinodiscophyceae Stephanodiscales Stephanodiscaceae Cyclostephanos Cyclostephanos tholiformis
31750008 31750008 PRJNA380416_P_NODE_3497_length_322_cov_1.117216_g3350_i0 PRJNA380416 3497 322 1.117216 3.59743552 Seminavis robusta 568900 SAR_Eukaryotes SAR_Eukaryotes 61.2 3.2e-8   NR CAB9516888.1 568900 g3350 i0 59 1.2763975155279501 39 16 36.3 0 4 120 706 744 CAB9516888.1 oligomeric mucus gel-forming [Seminavis robusta] diamond 411 61.2 1 Eukaryota Sar   Bacillariophyta Bacillariophyceae Naviculales Naviculaceae Seminavis Seminavis robusta
32273600 32273600 PRJNA380416_P_NODE_11878_length_166_cov_0.871795_g11731_i0 PRJNA380416 11878 166 0.871795 1.4471797 Bacillariophyta 2836 SAR_Eukaryotes SAR_Eukaryotes 72.8 2.64e-13   NR CAJ1969292.1 2856 g11731 i0 69.6 7.53614457831325 56 16 99.4 1 2 166 132 187 CAJ1969292.1 unnamed protein product [Cylindrotheca closterium] diamond 1251 72.8 1 Eukaryota Sar   Bacillariophyta Bacillariophyceae Bacillariales Bacillariaceae Cylindrotheca Cylindrotheca closterium
32288336 32288336 PRJNA380416_P_NODE_5999_length_235_cov_1.698925_g5852_i0 PRJNA380416 5999 235 1.698925 3.99247375 Fragilaria crotonensis 210448 SAR_Eukaryotes SAR_Eukaryotes 68.9 1.94e-11   NR KAI2509429.1 210448 g5852 i0 46.8 1.69787234042553 62 33 79.1 0 232 47 329 390 KAI2509429.1 hypothetical protein MHU86_4930 [Fragilaria crotonensis] diamond 399 68.9 1 Eukaryota Sar   Bacillariophyta Fragilariophyceae Fragilariales Fragilariaceae Fragilaria Fragilaria crotonensis

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;