RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA380416", tax_kingdom = "Viridiplantae" and tax_phylum = "Chlorophyta"

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tax_superkingdom 1

tax_phylum 1

  • Chlorophyta · 3 ✖

tax_kingdom 1

  • Viridiplantae · 3 ✖

tax_clade 1

bioproject 1

  • PRJNA380416 · 3 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
26648677 26648677 PRJNA380416_P_NODE_13361_length_162_cov_0.902655_g13214_i0 PRJNA380416 13361 162 0.902655 1.4623011 Eukaryota 2759 Plants Plants 51.6 9.13e-6   NR CAG9460495.1 765719 g13214 i0 46.9 2.7037037037037 49 26 90.7 0 5 151 2355 2403 CAG9460495.1 unnamed protein product [Pedinophyceae sp. YPF-701] diamond 438 52 0.992307692307692 Eukaryota core chlorophytes Viridiplantae Chlorophyta Pedinophyceae       Pedinophyceae sp. YPF-701
27028783 27028783 PRJNA380416_P_NODE_7582_length_208_cov_1.283019_g7435_i0 PRJNA380416 7582 208 1.283019 2.66867952 root 1 Root_unresolved Root_unresolved 114 3.37e-30   NR XP_002500059.1 296587 g7435 i0 78.3 4.97596153846154 69 15 99.5 0 208 2 99 167 XP_002500059.1 predicted protein, partial [Micromonas commoda] diamond 1035 115 0.991304347826087 Eukaryota   Viridiplantae Chlorophyta Mamiellophyceae Mamiellales Mamiellaceae Micromonas Micromonas commoda
27422905 27422905 PRJNA380416_P_NODE_4483_length_278_cov_1.589520_g4336_i0 PRJNA380416 4483 278 1.58952 4.4188656 Chloropicon primus 1764295 Plants Plants 90.5 2.5e-19   NR QDZ20675.1 1764295 g4336 i0 67.7 2.00719424460432 62 20 66.9 0 3 188 254 315 QDZ20675.1 receptor of activated protein kinase C [Chloropicon primus] diamond 558 90.5 1 Eukaryota   Viridiplantae Chlorophyta Chloropicophyceae Chloropicales Chloropicaceae Chloropicon Chloropicon primus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;