RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA380416", tax_kingdom = "Metazoa" and tax_phylum = "Nematoda"

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tax_superkingdom 1

tax_phylum 1

  • Nematoda · 2 ✖

tax_kingdom 1

  • Metazoa · 2 ✖

tax_clade 1

bioproject 1

  • PRJNA380416 · 2 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27770203 27770203 PRJNA380416_P_NODE_8004_length_202_cov_1.169935_g7857_i0 PRJNA380416 8004 202 1.169935 2.3632687 Heterodera trifolii 157864 Nematoda Nematoda 58.2 6.86e-8   NR KAL3073343.1 157864 g7857 i0 48.4 0.920792079207921 62 32 92.1 0 200 15 205 266 KAL3073343.1 hypothetical protein niasHT_038700 [Heterodera trifolii] diamond 186 58.2 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Heteroderidae Heterodera Heterodera trifolii
32273599 32273599 PRJNA380416_P_NODE_11198_length_167_cov_1.296610_g11051_i0 PRJNA380416 11198 167 1.29661 2.1653387 Rhabditida 6236 Nematoda Nematoda 60.5 5.2e-10   NR KAK6032507.1 6317 g11051 i0 58.2 4.88622754491018 55 23 98.8 0 167 3 27 81 KAK6032507.1 ribosomal protein L19e [Ostertagia ostertagi] diamond 816 60.5 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Trichostrongylidae Ostertagia Ostertagia ostertagi

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;