RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA380416" and tax_clade = "Haptista"

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analysis 2

tax_superkingdom 1

tax_phylum 1

tax_clade 1

  • Haptista · 3 ✖

bioproject 1

  • PRJNA380416 · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
11880729 11880729 PRJNA380416_P_NODE_11470_length_167_cov_0.864407_g11323_i0 PRJNA380416 11470 167 0.864407 1.44355969 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 111 7.250000000000001e-27   NR KAL1526108.1 97485 g11323 i0 92.7 7.90419161676647 55 4 98.8 0 2 166 373 427 KAL1526108.1 hypothetical protein AB1Y20_014837 [Prymnesium parvum] diamond 1320 111 1 Eukaryota Haptista   Haptophyta   Prymnesiales Prymnesiaceae Prymnesium Prymnesium parvum
13155763 13155763 PRJNA380416_P_NODE_8971_length_190_cov_1.446809_g8824_i0 PRJNA380416 8971 190 1.446809 2.7489371 Meringosphaera mediterranea 2837474 Root_unresolved Root_unresolved 122 1.2299999999999997e-23   NTclustered gi|2526806211|gb|OR195157.1| 2837474 g8824 i0 84.496 62.3736842105263 129 15 67 5 8 135 2815 2939 Meringosphaera mediterranea isolate S7 internal transcribed spacer 2 and large subunit ribosomal RNA gene, partial sequence blastn 11851 122 1 Eukaryota Haptista     Centroplasthelida     Meringosphaera Meringosphaera mediterranea
27454427 27454427 PRJNA380416_P_NODE_11483_length_167_cov_0.864407_g11336_i0 PRJNA380416 11483 167 0.864407 1.44355969 Pavlovales sp. CCMP2436 483367 Haptophyta other_Eukaryota 50.8 1.85e-5   NR KAJ1628748.1 483367 g11336 i0 42.1 1.97604790419162 57 29 95.2 1 161 3 544 600 KAJ1628748.1 P-loop containing nucleoside triphosphate hydrolase protein [Pavlovales sp. CCMP2436] diamond 330 50.8 1 Eukaryota Haptista   Haptophyta Pavlovophyceae Pavlovales     Pavlovales sp. CCMP2436

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;