RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

2 rows where bioproject = "PRJNA380416", tax_clade = "FCB group" and tax_phylum = "Gemmatimonadota"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Gemmatimonadota · 2 ✖

tax_kingdom 1

tax_clade 1

  • FCB group · 2 ✖

bioproject 1

  • PRJNA380416 · 2 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
26980022 26980022 PRJNA380416_P_NODE_5762_length_241_cov_1.197917_g5615_i0 PRJNA380416 5762 241 1.197917 2.88697997 Gemmatimonadota bacterium 2026742 Bacteria Bacteria 42.4 0.0465   NR MDP6460205.1 2026742 g5615 i0 38.6 0.871369294605809 70 30 72.2 2 25 198 24 92 MDP6460205.1 rhomboid family intramembrane serine protease [Gemmatimonadota bacterium] diamond 210 42.4 1 Bacteria FCB group Pseudomonadati Gemmatimonadota         Gemmatimonadota bacterium
29096214 29096214 PRJNA380416_P_NODE_9628_length_184_cov_0.866667_g9481_i0 PRJNA380416 9628 184 0.866667 1.59466728 Gemmatimonadales bacterium 2448054 Bacteria Bacteria 41.6 0.0425   NR MFN0181791.1 2448054 g9481 i0 54.5 0.53804347826087 33 14 52.2 1 85 180 132 164 MFN0181791.1 ABC transporter permease subunit [Gemmatimonadales bacterium] diamond 99 41.6 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     Gemmatimonadales bacterium

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;