RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA380129" and tax_phylum = "Acidobacteriota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Acidobacteriota · 2 ✖

tax_kingdom 1

bioproject 1

  • PRJNA380129 · 2 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
15704704 15704704 PRJNA380129_P_NODE_953_length_664_cov_1.400000_g648_i0 PRJNA380129 953 664 1.4 9.296 uncultured Granulicella sp. 1241325 Bacteria Bacteria 536 1.4999999999999995e-147   NTclustered gi|2626255659|emb|OY843766.1| 1241325 g648 i0 98.675 68.7183734939759 302 4 74 0 362 663 3195263 3195564 MAG: uncultured Granulicella sp. isolate e6d70442-04f8-4699-a368-e2225de37168 genome assembly, chromosome: 1 blastn 45629 536 1 Bacteria   Pseudomonadati Acidobacteriota Terriglobia Terriglobales Acidobacteriaceae Granulicella uncultured Granulicella sp.
29159430 29159430 PRJNA380129_P_NODE_3669_length_156_cov_2.661417_g3345_i0 PRJNA380129 3669 156 2.661417 4.15181052 Bryobacterales bacterium 2026791 Bacteria Bacteria 41.6 0.00881   NR MCU1326627.1 2026791 g3345 i0 62.5 0.461538461538462 24 9 46.2 0 156 85 57 80 MCU1326627.1 hypothetical protein [Bryobacterales bacterium] diamond 72 41.6 1 Bacteria   Pseudomonadati Acidobacteriota Terriglobia Bryobacterales     Bryobacterales bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;