RNAquarium Metadata Server
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contig_metadata

6 rows where bioproject = "PRJNA379145" and tax_phylum = "Thermoproteota"

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tax_superkingdom 1

tax_phylum 1

  • Thermoproteota · 6 ✖

tax_kingdom 1

bioproject 1

  • PRJNA379145 · 6 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
26821912 26821912 PRJNA379145_P_NODE_19701_length_603_cov_3.066667_g17843_i0 PRJNA379145 19701 603 3.066667 18.49200201 Candidatus Methanomethylicaceae archaeon 2282146 Archaea Archaea 111 1.55e-25   NR MCX8181953.1 2282146 g17843 i0 33.7 1.03482587064677 208 122 97.5 5 592 5 104 307 MCX8181953.1 alpha/beta hydrolase [Candidatus Methanomethyliaceae archaeon] diamond 624 111 1 Archaea   Thermoproteati Thermoproteota Methanosuratincolia Candidatus Methanomethylicales Candidatus Methanomethylicaceae   Candidatus Methanomethylicaceae archaeon
28369787 28369787 PRJNA379145_P_NODE_59206_length_192_cov_1.352201_g57052_i0 PRJNA379145 59206 192 1.352201 2.59622592 Thermoprotei archaeon 2250277 Archaea Archaea 53.1 3.92e-6   NR MEM3711846.1 2250277 g57052 i0 47.2 2.484375 53 28 82.8 0 27 185 71 123 MEM3711846.1 hypothetical protein [Thermoprotei archaeon] diamond 477 53.1 1 Archaea   Thermoproteati Thermoproteota Thermoprotei       Thermoprotei archaeon
28717243 28717243 PRJNA379145_P_NODE_48647_length_241_cov_1.913462_g46493_i0 PRJNA379145 48647 241 1.913462 4.61144342 Pyrobaculum sp. WP3 2004705 Archaea Archaea 49.7 1.26e-4   NR AKT35600.1 1227555 g46493 i0 53.8 0.485477178423237 39 18 48.5 0 117 233 601 639 AKT35600.1 putative signal-transduction protein containing cAMP-binding and CBS domain [Pyrobaculum sp. WP30] diamond 117 49.7 1 Archaea   Thermoproteati Thermoproteota Thermoprotei Thermoproteales Thermoproteaceae Pyrobaculum Pyrobaculum sp. WP30
29474609 29474609 PRJNA379145_P_NODE_25890_length_480_cov_3.331096_g23841_i0 PRJNA379145 25890 480 3.331096 15.9892608 Vulcanisaeta sp. JCM 14467 1295370 Archaea Archaea 60.5 2.7e-7   NR WP_054849042.1 1295370 g23841 i0 44.4 1.21875 72 39 45 1 68 283 303 373 WP_054849042.1 ankyrin repeat domain-containing protein [Vulcanisaeta sp. JCM 14467] diamond 585 60.5 1 Archaea   Thermoproteati Thermoproteota Thermoprotei Thermoproteales Thermoproteaceae Vulcanisaeta Vulcanisaeta sp. JCM 14467
29948609 29948609 PRJNA379145_P_NODE_24911_length_497_cov_3.204741_g22886_i0 PRJNA379145 24911 497 3.204741 15.92756277 Aeropyrum pernix 56636 Archaea Archaea 45.4 0.049   NR WP_131159965.1 56636 g22886 i0 42.4 0.356136820925553 59 33 35.6 1 69 245 113 170 WP_131159965.1 hydantoinase/oxoprolinase family protein [Aeropyrum pernix] diamond 177 45.4 1 Archaea   Thermoproteati Thermoproteota Thermoprotei Desulfurococcales Desulfurococcaceae Aeropyrum Aeropyrum pernix
31370738 31370738 PRJNA379145_P_NODE_26976_length_461_cov_10.259346_g24907_i0 PRJNA379145 26976 461 10.259346 47.29558506 Saccharolobus caldissimus 1702097 Archaea Archaea 85.1 7.83e-18   NR WP_229570762.1 1702097 g24907 i0 39.9 0.898047722342733 138 81 89.8 2 442 29 4 139 WP_229570762.1 universal stress protein [Saccharolobus caldissimus] diamond 414 85.1 1 Archaea   Thermoproteati Thermoproteota Thermoprotei Sulfolobales Sulfolobaceae Saccharolobus Saccharolobus caldissimus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;