RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA379145", tax_kingdom = "Bacillati" and tax_phylum = "Vulcanimicrobiota"

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tax_superkingdom 1

tax_phylum 1

  • Vulcanimicrobiota · 3 ✖

tax_kingdom 1

  • Bacillati · 3 ✖

bioproject 1

  • PRJNA379145 · 3 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
28401351 28401351 PRJNA379145_P_NODE_11866_length_860_cov_2.636034_g10525_i0 PRJNA379145 11866 860 2.636034 22.6698924 Candidatus Baltobacteraceae bacterium 3107660 Bacteria Bacteria 83.6 4.77e-14   NR HLI95927.1 2952909 g10525 i0 27.9 2.81162790697674 265 161 84.1 11 818 96 106 364 HLI95927.1 PQQ-binding-like beta-propeller repeat protein [Candidatus Baltobacteraceae bacterium] diamond 2418 83.6 1 Bacteria   Bacillati Vulcanimicrobiota Vulcanimicrobiia Vulcanimicrobiales Vulcanimicrobiaceae   Candidatus Baltobacteraceae bacterium
30928187 30928187 PRJNA379145_P_NODE_61194_length_185_cov_1.065789_g59040_i0 PRJNA379145 61194 185 1.065789 1.97170965 Candidatus Xenobia bacterium 3036772 Bacteria Bacteria 58.9 3.31e-8   NR GMU54910.1 3036772 g59040 i0 57.4 0.762162162162162 47 20 76.2 0 157 17 18 64 GMU54910.1 MAG: malate synthase [Candidatus Xenobia bacterium] diamond 141 58.9 1 Bacteria   Bacillati Vulcanimicrobiota Candidatus Xenobia       Candidatus Xenobia bacterium
31180427 31180427 PRJNA379145_P_NODE_22955_length_533_cov_1.950000_g20983_i0 PRJNA379145 22955 533 1.95 10.3935 Candidatus Xenobia bacterium 3036772 Bacteria Bacteria 49.3 0.00295   NR HEY4002776.1 3036772 g20983 i0 32.2 0.647279549718574 115 73 61.9 2 404 75 442 556 HEY4002776.1 DEAD/DEAH box helicase [Candidatus Xenobia bacterium] diamond 345 49.3 1 Bacteria   Bacillati Vulcanimicrobiota Candidatus Xenobia       Candidatus Xenobia bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;