RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

4 rows where bioproject = "PRJNA379145" and tax_clade = "Pithoviruses"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_clade 1

  • Pithoviruses · 4 ✖

bioproject 1

  • PRJNA379145 · 4 ✖

analysis 1

tax_phylum 0

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
16978308 16978308 PRJNA379145_P_NODE_4654_length_1378_cov_4.322677_g4075_i0 PRJNA379145 4654 1378 4.322677 59.56648906 Pithovirus LCPAC4 2506597 Viruses Viruses 247 3.79e-75   NR QBK93439.1 2506597 g4075 i0 51 1.69593613933237 263 116 56 4 420 1190 1 256 QBK93439.1 MAG: 2OG-Fe(II) oxygenase superfamily protein [Pithovirus LCPAC404] diamond 2337 247 1 Viruses Pithoviruses             Pithovirus LCPAC404
27724187 27724187 PRJNA379145_P_NODE_14424_length_755_cov_8.904432_g12864_i0 PRJNA379145 14424 755 8.904432 67.2284616 Fadolivirus 2763561 Viruses Viruses 265 6.96e-85   NR QBK91025.1 2506591 g12864 i0 53.9 2.01059602649007 254 109 97.7 3 742 5 31 284 QBK91025.1 MAG: uncharacterized protein LCPAC201_03260 [Pithovirus LCPAC201] diamond 1518 267 0.99250936329588 Viruses Pithoviruses             Pithovirus LCPAC201
27991010 27991010 PRJNA379145_P_NODE_10225_length_940_cov_3.314223_g9056_i0 PRJNA379145 10225 940 3.314223 31.1536962 Cedratvirus kamchatka 2716914 Viruses Viruses 125 1.0400000000000002e-27   NR QIN54439.1 2716914 g9056 i0 33.7 2.67446808510638 264 146 78.8 7 841 101 1310 1561 QIN54439.1 serine/Threonine-protein kinase with PBP type 2 domain [Cedratvirus kamchatka] diamond 2514 125 1 Viruses Pithoviruses           Alphacedratvirus Alphacedratvirus rossiense
31148779 31148779 PRJNA379145_P_NODE_48515_length_242_cov_1.574163_g46361_i0 PRJNA379145 48515 242 1.574163 3.80947446 Pithovirus LCPAC1 2506588 Viruses Viruses 48.1 4.46e-4   NR QBK90395.1 2506588 g46361 i0 42 1.31404958677686 50 29 62 0 240 91 172 221 QBK90395.1 MAG: putative oxidoreductase [Pithovirus LCPAC103] diamond 318 48.1 1 Viruses Pithoviruses             Pithovirus LCPAC103

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;