RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJNA379145", tax_clade = "PVC group" and tax_phylum = "Lentisphaerota"

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tax_superkingdom 1

tax_phylum 1

  • Lentisphaerota · 4 ✖

tax_kingdom 1

tax_clade 1

  • PVC group · 4 ✖

bioproject 1

  • PRJNA379145 · 4 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
16978450 16978450 PRJNA379145_P_NODE_6634_length_1181_cov_8.871951_g5836_i0 PRJNA379145 6634 1181 8.871951 104.77774131 Lentisphaeria bacterium 2053569 Bacteria Bacteria 391 7.63e-132   NR MCK5804907.1 2053569 g5836 i0 54.3 4.25994919559695 335 151 84.8 2 1098 97 3 336 MCK5804907.1 branched-chain amino acid aminotransferase [Lentisphaeria bacterium] diamond 5031 391 1 Bacteria PVC group Pseudomonadati Lentisphaerota Lentisphaeria       Lentisphaeria bacterium
31545900 31545900 PRJNA379145_P_NODE_25596_length_485_cov_6.831858_g23553_i0 PRJNA379145 25596 485 6.831858 33.1345113 Pseudomonadati 3379134 Bacteria Bacteria 51.2 4.11e-4   NR OGV81796.1 1798577 g23553 i0 48.1 2.60412371134021 54 27 32.8 1 269 111 137 190 OGV81796.1 MAG: hypothetical protein A3K18_08555 [Lentisphaerae bacterium RIFOXYA12_64_32] diamond 1263 51.6 0.992248062015504 Bacteria PVC group Pseudomonadati Lentisphaerota         Lentisphaerae bacterium RIFOXYA12_64_32
32193132 32193132 PRJNA379145_P_NODE_48658_length_241_cov_1.846154_g46504_i0 PRJNA379145 48658 241 1.846154 4.44923114 Lentisphaerota bacterium 1932692 Bacteria Bacteria 43.5 0.0189   NR MFH0880410.1 1932692 g46504 i0 40.9 0.547717842323652 44 26 54.8 0 230 99 472 515 MFH0880410.1 ubiquitin-like protein [Lentisphaerota bacterium] diamond 132 43.5 1 Bacteria PVC group Pseudomonadati Lentisphaerota         Lentisphaerota bacterium
32224788 32224788 PRJNA379145_P_NODE_47558_length_248_cov_1.558140_g45405_i0 PRJNA379145 47558 248 1.55814 3.8641872 Lentisphaerota bacterium 1932692 Bacteria Bacteria 58.9 7.68e-8   NR MBE6365694.1 1932692 g45405 i0 44.2 0.629032258064516 52 29 62.9 0 78 233 29 80 MBE6365694.1 sel1 repeat family protein [Lentisphaerota bacterium] diamond 156 58.9 1 Bacteria PVC group Pseudomonadati Lentisphaerota         Lentisphaerota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;