RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJNA379145", tax_clade = "PVC group" and tax_phylum = "Kiritimatiellota"

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tax_superkingdom 1

tax_phylum 1

  • Kiritimatiellota · 4 ✖

tax_kingdom 1

tax_clade 1

  • PVC group · 4 ✖

bioproject 1

  • PRJNA379145 · 4 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2951670 2951670 PRJNA379145_P_NODE_57103_length_200_cov_1.724551_g54949_i0 PRJNA379145 57103 200 1.724551 3.449102 Pseudomonadati 3379134 Bacteria Bacteria 89.4 8.11e-19   NR HMO04221.1 2212473 g54949 i0 69.8 11.955 63 19 94.5 0 2 190 294 356 HMO04221.1 aconitate hydratase AcnA [Kiritimatiellia bacterium] diamond 2391 89.4 1 Bacteria PVC group Pseudomonadati Kiritimatiellota Kiritimatiellia       Kiritimatiellia bacterium
28811550 28811550 PRJNA379145_P_NODE_48328_length_243_cov_1.666667_g46174_i0 PRJNA379145 48328 243 1.666667 4.05000081 Kiritimatiellales bacterium 2202731 Bacteria Bacteria 48.1 4.93e-4   NR MCF7844477.1 2202731 g46174 i0 46.8 0.765432098765432 62 30 74.1 3 186 7 28 88 MCF7844477.1 DUF4215 domain-containing protein [Kiritimatiellales bacterium] diamond 186 48.1 1 Bacteria PVC group Pseudomonadati Kiritimatiellota Kiritimatiellia Kiritimatiellales     Kiritimatiellales bacterium
32066361 32066361 PRJNA379145_P_NODE_28038_length_445_cov_4.378641_g25948_i0 PRJNA379145 28038 445 4.378641 19.48495245 Kiritimatiellota bacterium B12222 3040511 Bacteria Bacteria 52.4 4.67e-5   NR WFB36604.1 3040511 g25948 i0 33.3 0.768539325842697 114 74 75.5 2 67 402 39 152 WFB36604.1 hypothetical protein P3T73_02365 [Kiritimatiellota bacterium B12222] diamond 342 52.4 1 Bacteria PVC group Pseudomonadati Kiritimatiellota         Kiritimatiellota bacterium B12222
32541309 32541309 PRJNA379145_P_NODE_29279_length_427_cov_1.827411_g27174_i0 PRJNA379145 29279 427 1.827411 7.80304497 Kiritimatiellota bacterium 2599938 Bacteria Bacteria 55.8 6.59e-7   NR MCX6998616.1 2599938 g27174 i0 29.6 2.42388758782201 115 79 80.1 2 38 379 1 114 MCX6998616.1 phenylpyruvate tautomerase MIF-related protein [Kiritimatiellota bacterium] diamond 1035 55.8 1 Bacteria PVC group Pseudomonadati Kiritimatiellota         Kiritimatiellota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;