RNAquarium Metadata Server
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contig_metadata

6 rows where bioproject = "PRJNA379145", tax_clade = "PVC group" and tax_phylum = "Candidatus Omnitrophota"

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tax_superkingdom 1

tax_phylum 1

  • Candidatus Omnitrophota · 6 ✖

tax_kingdom 1

tax_clade 1

  • PVC group · 6 ✖

bioproject 1

  • PRJNA379145 · 6 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
8054214 8054214 PRJNA379145_P_NODE_50127_length_233_cov_1.305000_g47973_i0 PRJNA379145 50127 233 1.305 3.04065 Candidatus Omnitrophota bacterium 2035772 Bacteria Bacteria 118 6.9e-29   NR MCQ9205303.1 2035772 g47973 i0 76.3 2.76824034334764 76 18 97.9 0 5 232 779 854 MCQ9205303.1 pyruvate, phosphate dikinase [Candidatus Omnitrophota bacterium] diamond 645 118 1 Bacteria PVC group Pseudomonadati Candidatus Omnitrophota         Candidatus Omnitrophota bacterium
15703420 15703420 PRJNA379145_P_NODE_24333_length_507_cov_9.516878_g22321_i0 PRJNA379145 24333 507 9.516878 48.25057146 Pseudomonadati 3379134 Bacteria Bacteria 223 3.84e-71   NR MCA9403081.1 2035772 g22321 i0 69.5 7.24260355029586 151 42 87 1 474 34 57 207 MCA9403081.1 peptide-methionine (R)-S-oxide reductase MsrB [Candidatus Omnitrophota bacterium] diamond 3672 223 1 Bacteria PVC group Pseudomonadati Candidatus Omnitrophota         Candidatus Omnitrophota bacterium
26694985 26694985 PRJNA379145_P_NODE_33821_length_366_cov_1.837838_g31676_i0 PRJNA379145 33821 366 1.837838 6.72648708 Candidatus Omnitrophota bacterium 2035772 Bacteria Bacteria 82.8 1.42e-15   NR MEW6236892.1 2035772 g31676 i0 39.7 0.991803278688525 121 72 99.2 1 3 365 546 665 MEW6236892.1 L-fucokinase [Candidatus Omnitrophota bacterium] diamond 363 82.8 1 Bacteria PVC group Pseudomonadati Candidatus Omnitrophota         Candidatus Omnitrophota bacterium
29127812 29127812 PRJNA379145_P_NODE_31529_length_395_cov_2.436464_g29398_i0 PRJNA379145 31529 395 2.436464 9.6240328 Omnitrophica WOR_2 bacterium SM23_29 1703776 Bacteria Bacteria 47 0.00582   NR KPK38701.1 1703776 g29398 i0 34.7 0.569620253164557 75 49 57 0 324 100 147 221 KPK38701.1 MAG: hypothetical protein AMJ78_09595 [Omnitrophica WOR_2 bacterium SM23_29] diamond 225 47 1 Bacteria PVC group Pseudomonadati Candidatus Omnitrophota         Omnitrophica WOR_2 bacterium SM23_29
30043317 30043317 PRJNA379145_P_NODE_5571_length_1280_cov_3.058540_g4886_i0 PRJNA379145 5571 1280 3.05854 39.149312 Candidatus Omnitrophota bacterium 2035772 Bacteria Bacteria 144 3.93e-37   NR MFT5207936.1 2035772 g4886 i0 40 0.91171875 180 108 42.2 0 123 662 5 184 MFT5207936.1 peroxiredoxin [Candidatus Omnitrophota bacterium] diamond 1167 144 1 Bacteria PVC group Pseudomonadati Candidatus Omnitrophota         Candidatus Omnitrophota bacterium
31798571 31798571 PRJNA379145_P_NODE_35997_length_341_cov_2.172078_g33849_i0 PRJNA379145 35997 341 2.172078 7.40678598 Pseudomonadati 3379134 Bacteria Bacteria 105 4.59e-25   NR MBU4478697.1 2035772 g33849 i0 74.3 7.3900293255132 70 18 61.6 0 213 4 179 248 MBU4478697.1 2,3-diphosphoglycerate-dependent phosphoglycerate mutase [Candidatus Omnitrophota bacterium] diamond 2520 106 0.990566037735849 Bacteria PVC group Pseudomonadati Candidatus Omnitrophota         Candidatus Omnitrophota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;