RNAquarium Metadata Server
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contig_metadata

8 rows where bioproject = "PRJNA379145", tax_clade = "Methanomada group" and tax_phylum = "Methanobacteriota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Methanobacteriota · 8 ✖

tax_kingdom 1

tax_clade 1

  • Methanomada group · 8 ✖

bioproject 1

  • PRJNA379145 · 8 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
19526559 19526559 PRJNA379145_P_NODE_25136_length_493_cov_2.389130_g23106_i0 PRJNA379145 25136 493 2.38913 11.7784109 Methanobrevibacter sp. TLL-48-HuF1 2870563 Archaea Archaea 52.8 0.048   NTclustered gi|2246976648|gb|CP081485.1| 2870563 g23106 i0 100 0.0567951318458418 28 0 6 0 198 225 1352682 1352709 Methanobrevibacter sp. TLL-48-HuF1 chromosome, complete genome blastn 28 52.8 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobrevibacter Methanobrevibacter sp. TLL-48-HuF1
27818760 27818760 PRJNA379145_P_NODE_61004_length_185_cov_1.907895_g58850_i0 PRJNA379145 61004 185 1.907895 3.52960575 root 1 Root_unresolved Root_unresolved 43.1 0.0129   NR WP_019268622.1 2173 g58850 i0 41.5 6.85945945945946 53 29 82.7 1 22 174 673 725 WP_019268622.1 beta strand repeat-containing protein [Methanobrevibacter smithii] diamond 1269 43.1 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobrevibacter Methanobrevibacter smithii
28607889 28607889 PRJNA379145_P_NODE_41827_length_288_cov_1.674510_g39675_i0 PRJNA379145 41827 288 1.67451 4.8225888 root 1 Root_unresolved Root_unresolved 44.3 0.0188   NR WP_292797136.1 66852 g39675 i0 32.5 5.33333333333333 77 38 80.2 2 10 240 90 152 WP_292797136.1 hypothetical protein [Methanobrevibacter sp.] diamond 1536 44.3 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobrevibacter Methanobrevibacter sp.
28969795 28969795 PRJNA379145_P_NODE_47808_length_246_cov_2.276995_g45655_i0 PRJNA379145 47808 246 2.276995 5.6014077 Methanobacterium ferruginis 710191 Archaea Archaea 63.5 1.75e-9   NR WP_286242525.1 710191 g45655 i0 50 0.804878048780488 66 33 80.5 0 48 245 268 333 WP_286242525.1 phenylalanine--tRNA ligase subunit beta [Methanobacterium ferruginis] diamond 198 63.5 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobacterium Methanobacterium ferruginis
29744325 29744325 PRJNA379145_P_NODE_5830_length_1255_cov_3.059738_g5119_i0 PRJNA379145 5830 1255 3.059738 38.3997119 root 1 Root_unresolved Root_unresolved 50.1 0.0245   NR MBE6503458.1 66852 g5119 i0 26.1 0.874900398406374 211 129 46.6 9 135 719 1143 1342 MBE6503458.1 hypothetical protein [Methanobrevibacter sp.] diamond 1098 50.4 0.994047619047619 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobrevibacter Methanobrevibacter sp.
29902580 29902580 PRJNA379145_P_NODE_51171_length_227_cov_1.664948_g49017_i0 PRJNA379145 51171 227 1.664948 3.77943196 Methanobacteriaceae 2159 Archaea Archaea 43.5 0.0168   NR WP_410319841.1 66852 g49017 i0 40.8 6.38325991189427 71 31 93.8 3 12 224 46 105 WP_410319841.1 Ig-like domain repeat protein [Methanobrevibacter sp.] diamond 1449 43.5 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobrevibacter Methanobrevibacter sp.
31040136 31040136 PRJNA379145_P_NODE_22415_length_543_cov_2.084314_g20463_i0 PRJNA379145 22415 543 2.084314 11.31782502 Methanobrevibacter 2172 Archaea Archaea 95.9 1.08e-19   NR WP_004035816.1 2173 g20463 i0 34 7.0828729281768 162 94 84 5 18 473 226 384 WP_004035816.1 tRNA (guanine(10)-N(2))-dimethyltransferase [Methanobrevibacter smithii] diamond 3846 96.3 0.995846313603323 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobrevibacter Methanobrevibacter smithii
32477989 32477989 PRJNA379145_P_NODE_36899_length_332_cov_1.685619_g34751_i0 PRJNA379145 36899 332 1.685619 5.59625508 Methanothermobacter sp. DP 2998972 Archaea Archaea 55.1 4.48e-6   NR WP_321210882.1 2998972 g34751 i0 30.8 1.59939759036145 107 70 93.1 2 18 326 125 231 WP_321210882.1 PAS domain S-box protein [Methanothermobacter sp. DP] diamond 531 55.1 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanothermobacter Methanothermobacter sp. DP

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;