RNAquarium Metadata Server
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contig_metadata

1 row where bioproject = "PRJNA379145", tax_clade = "Bacteria candidate phyla" and tax_phylum = "Candidatus Brenneribacteriota"

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tax_superkingdom 1

tax_phylum 1

  • Candidatus Brenneribacteriota · 1 ✖

tax_clade 1

  • Bacteria candidate phyla · 1 ✖

bioproject 1

  • PRJNA379145 · 1 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
30218342 30218342 PRJNA379145_P_NODE_8872_length_1019_cov_3.125761_g7837_i0 PRJNA379145 8872 1019 3.125761 31.85150459 root 1 Root_unresolved Root_unresolved 174 2.3e-48   NR PIP50406.1 1974524 g7837 i0 37.6 10.360157016683 274 161 78.6 6 64 864 1 271 PIP50406.1 MAG: GNAT family N-acetyltransferase [Candidatus Brennerbacteria bacterium CG23_combo_of_CG06-09_8_20_14_all_44_41] diamond 10557 175 0.994285714285714 Bacteria Bacteria candidate phyla   Candidatus Brenneribacteriota         Candidatus Brennerbacteria bacterium CG23_combo_of_CG06-09_8_20_14_all_44_41

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;