RNAquarium Metadata Server
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contig_metadata

8 rows where bioproject = "PRJNA379145", tax_clade = "Amoebozoa" and tax_phylum = "Tubulinea"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Tubulinea · 8 ✖

tax_clade 1

  • Amoebozoa · 8 ✖

bioproject 1

  • PRJNA379145 · 8 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1675317 1675317 PRJNA379145_P_NODE_19802_length_600_cov_90.220459_g17941_i0 PRJNA379145 19802 600 90.220459 541.322754 Cryptodifflugia operculata 1078836 Tubulinea other_Eukaryota 676 0   NTclustered gi|345452574|gb|JF694305.1| 1078836 g17941 i0 87.124 102.608333333333 598 75 99 2 1 597 83 679 Cryptodifflugia operculata clone 9 actin gene, partial cds blastn 61565 676 1 Eukaryota Amoebozoa   Tubulinea Elardia Arcellinida Cryptodifflugiidae Cryptodifflugia Cryptodifflugia operculata
2349330 2349330 PRJNA379145_P_NODE_33022_length_375_cov_106.698830_g30881_i0 PRJNA379145 33022 375 106.69883 400.1206125 Tubulinea 555369 Tubulinea other_Eukaryota 693 0   NTclustered gi|11527302|gb|AF293895.1|AF293895 136450 g30881 i0 100 72.2746666666667 375 0 100 0 1 375 623 997 Echinamoeba exundans small subunit ribosomal RNA gene, complete sequence blastn 27103 693 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida   Echinamoebidae Echinamoeba Echinamoeba exundans
8054373 8054373 PRJNA379145_P_NODE_67207_length_166_cov_2.345865_g65053_i0 PRJNA379145 67207 166 2.345865 3.8941359 Vermamoeba vermiformis 5778 Tubulinea other_Eukaryota 235 1.2899999999999998e-57   NTclustered gi|423291976|gb|JQ519433.1| 5778 g65053 i0 92.169 99.3674698795181 166 13 100 0 1 166 103 268 Vermamoeba vermiformis clone JG10.93_b2 actin gene, partial cds blastn 16495 235 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
8726736 8726736 PRJNA379145_P_NODE_55967_length_204_cov_3.918129_g53813_i0 PRJNA379145 55967 204 3.918129 7.99298316 Tubulinea 555369 Tubulinea other_Eukaryota 377 2.59e-100   NTclustered gi|11527302|gb|AF293895.1|AF293895 136450 g53813 i0 100 101.426470588235 204 0 100 0 1 204 1668 1465 Echinamoeba exundans small subunit ribosomal RNA gene, complete sequence blastn 20691 377 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida   Echinamoebidae Echinamoeba Echinamoeba exundans
13154749 13154749 PRJNA379145_P_NODE_52791_length_219_cov_1.424731_g50637_i0 PRJNA379145 52791 219 1.424731 3.12016089 Vermamoeba vermiformis 5778 Tubulinea other_Eukaryota 366 6.09e-97   NTclustered gi|62910949|gb|AY925001.1| 5778 g50637 i0 96.804 2.20547945205479 219 7 100 0 1 219 728 510 Hartmannella vermiformis Rpl7A mRNA, partial cds blastn 483 366 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
24627458 24627458 PRJNA379145_P_NODE_72560_length_153_cov_2.658333_g70405_i0 PRJNA379145 72560 153 2.658333 4.06724949 Vermamoeba vermiformis 5778 Tubulinea other_Eukaryota 215 1.51e-51   NTclustered gi|423291974|gb|JQ519432.1| 5778 g70405 i0 93.706 98.6274509803922 143 9 93 0 1 143 124 266 Vermamoeba vermiformis clone JG10.89_a2 actin gene, partial cds blastn 15090 215 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
25300172 25300172 PRJNA379145_P_NODE_15080_length_733_cov_4.387143_g13465_i0 PRJNA379145 15080 733 4.387143 32.15775819 Vermamoeba vermiformis 5778 Tubulinea other_Eukaryota 249 2.1800000000000003e-79   NR AAY21191.1 5778 g13465 i0 67.7 0.78581173260573 192 61 78.6 1 2 577 41 231 AAY21191.1 Rpl7A, partial [Vermamoeba vermiformis] diamond 576 249 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
27801598 27801598 PRJNA379145_P_NODE_24764_length_500_cov_1.749465_g22742_i0 PRJNA379145 24764 500 1.749465 8.747325 Vermamoeba vermiformis 5778 Tubulinea other_Eukaryota 171 1.08e-51   NR ABD72565.1 5778 g22742 i0 59 0.834 139 55 83.4 1 490 74 1 137 ABD72565.1 chitinase-like protein cluster B, partial [Vermamoeba vermiformis] diamond 417 171 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;