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contig_metadata

30 rows where bioproject = "PRJNA376117", tax_phylum = "Myxococcota" and tax_superkingdom = "Bacteria"

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analysis 2

tax_superkingdom 1

  • Bacteria · 30 ✖

tax_phylum 1

  • Myxococcota · 30 ✖

tax_kingdom 1

bioproject 1

  • PRJNA376117 · 30 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
399945 399945 PRJNA376117_P_NODE_32621_length_255_cov_1.307692_g32319_i0 PRJNA376117 32621 255 1.307692 3.3346146 Pseudomonadati 3379134 Bacteria Bacteria 102 1.29e-25   NR MBC8246557.1 2026735 g32319 i0 78.6 6.63529411764706 56 12 65.9 0 86 253 4 59 MBC8246557.1 single-stranded DNA-binding protein [Deltaproteobacteria bacterium] diamond 1692 103 0.990291262135922 Bacteria   Pseudomonadati Myxococcota Myxococcia       Deltaproteobacteria bacterium
13153563 13153563 PRJNA376117_P_NODE_22851_length_290_cov_1.276498_g22549_i0 PRJNA376117 22851 290 1.276498 3.7018442 Bacteria 2 Bacteria Bacteria 166 6.54e-49   NR MCS6912682.1 2818507 g22549 i0 81.3 2.97931034482759 96 18 99.3 0 289 2 34 129 MCS6912682.1 ABC transporter ATP-binding protein [Myxococcota bacterium] diamond 864 166 1 Bacteria   Pseudomonadati Myxococcota         Myxococcota bacterium
13153674 13153674 PRJNA376117_P_NODE_31291_length_260_cov_1.534759_g30989_i0 PRJNA376117 31291 260 1.534759 3.9903734 Labilithrix luteola 1391654 Bacteria Bacteria 289 1.66e-73   NTclustered gi|913610804|gb|CP012333.1| 1391654 g30989 i0 86.923 1.95384615384615 260 30 99 4 1 258 9380772 9381029 Labilithrix luteola strain DSM 27648, complete genome blastn 508 289 1 Bacteria   Pseudomonadati Myxococcota   Polyangiales Labilitrichaceae Labilithrix Labilithrix luteola
20199902 20199902 PRJNA376117_P_NODE_6116_length_544_cov_5.528662_g5816_i0 PRJNA376117 6116 544 5.528662 30.07592128 root 1 Root_unresolved Root_unresolved 202 5.02e-47   NTclustered gi|1566495190|gb|CP012670.1| 56 g5816 i0 73.968 91.0533088235294 557 120 99 23 1 543 4849402 4849947 Sorangium cellulosum strain So ceGT47 chromosome, complete genome blastn 49533 202 1 Bacteria   Pseudomonadati Myxococcota   Polyangiales Polyangiaceae Sorangium Sorangium cellulosum
26694929 26694929 PRJNA376117_P_NODE_34081_length_251_cov_0.865169_g33779_i0 PRJNA376117 34081 251 0.865169 2.17157419 Polyangia bacterium 3058050 Bacteria Bacteria 87.4 6.13e-18   NR MFO8071832.1 3058050 g33779 i0 63.9 1.43426294820717 61 22 72.9 0 3 185 380 440 MFO8071832.1 cyclic 2,3-diphosphoglycerate synthase [Polyangia bacterium] diamond 360 87.4 1 Bacteria   Pseudomonadati Myxococcota         Polyangia bacterium
26916690 26916690 PRJNA376117_P_NODE_22502_length_291_cov_2.178899_g22200_i0 PRJNA376117 22502 291 2.178899 6.34059609 Deltaproteobacteria bacterium 2026735 Bacteria Bacteria 47 0.00227   NR TNF25765.1 2026735 g22200 i0 69.7 0.34020618556701 33 9 33 1 288 193 372 404 TNF25765.1 MAG: hypothetical protein EP329_22425 [Deltaproteobacteria bacterium] diamond 99 47 1 Bacteria   Pseudomonadati Myxococcota Myxococcia       Deltaproteobacteria bacterium
27454312 27454312 PRJNA376117_P_NODE_11423_length_399_cov_2.567485_g11121_i0 PRJNA376117 11423 399 2.567485 10.24426515 Kofleriaceae bacterium 2212474 Bacteria Bacteria 146 8.86e-40   NR HEX8106848.1 2212474 g11121 i0 51.5 0.992481203007519 132 60 99.2 1 2 397 170 297 HEX8106848.1 hypothetical protein [Kofleriaceae bacterium] diamond 396 146 1 Bacteria   Pseudomonadati Myxococcota   Haliangiales Kofleriaceae   Kofleriaceae bacterium
27864451 27864451 PRJNA376117_P_NODE_15865_length_345_cov_1.415441_g15563_i0 PRJNA376117 15865 345 1.415441 4.88327145 Myxococcales bacterium 2026763 Bacteria Bacteria 145 3.89e-39   NR MDD9935209.1 2026763 g15563 i0 52.6 0.991304347826087 114 54 99.1 0 2 343 207 320 MDD9935209.1 thrombospondin type-1 domain-containing protein [Myxococcales bacterium] diamond 342 145 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales     Myxococcales bacterium
27959260 27959260 PRJNA376117_P_NODE_40265_length_245_cov_0.895349_g39963_i0 PRJNA376117 40265 245 0.895349 2.19360505 Myxococcaceae bacterium 2484252 Bacteria Bacteria 53.5 4.2e-6   NR TAK19922.1 2484252 g39963 i0 37.9 1.7265306122449 66 40 79.6 1 19 213 175 240 TAK19922.1 MAG: hypothetical protein EPO40_31980 [Myxococcaceae bacterium] diamond 423 53.5 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales Myxococcaceae   Myxococcaceae bacterium
28148874 28148874 PRJNA376117_P_NODE_42725_length_243_cov_0.876471_g42423_i0 PRJNA376117 42725 243 0.876471 2.12982453 Deltaproteobacteria bacterium 2026735 Bacteria Bacteria 46.2 0.0021   NR HPR51968.1 2026735 g42423 i0 34.6 3.58024691358025 81 52 98.8 1 3 242 229 309 HPR51968.1 ankyrin repeat domain-containing protein [Deltaproteobacteria bacterium] diamond 870 46.2 1 Bacteria   Pseudomonadati Myxococcota Myxococcia       Deltaproteobacteria bacterium
28243282 28243282 PRJNA376117_P_NODE_35646_length_249_cov_1.880682_g35344_i0 PRJNA376117 35646 249 1.880682 4.68289818 Polyangiaceae bacterium 2268199 Bacteria Bacteria 86.3 1.53e-17   NR HEU4409333.1 2268199 g35344 i0 62.2 3.91566265060241 82 18 98.8 2 247 2 302 370 HEU4409333.1 ATP-binding protein [Polyangiaceae bacterium] diamond 975 86.3 1 Bacteria   Pseudomonadati Myxococcota   Polyangiales Polyangiaceae   Polyangiaceae bacterium
28369672 28369672 PRJNA376117_P_NODE_31666_length_258_cov_3.075676_g31364_i0 PRJNA376117 31666 258 3.075676 7.93524408 Myxococcota bacterium 2818507 Bacteria Bacteria 58.5 1.17e-7   NR MEZ4268060.1 2818507 g31364 i0 57.1 1.68604651162791 49 18 54.7 2 186 46 40 87 MEZ4268060.1 formylglycine-generating enzyme family protein [Myxococcota bacterium] diamond 435 58.5 1 Bacteria   Pseudomonadati Myxococcota         Myxococcota bacterium
29127762 29127762 PRJNA376117_P_NODE_28829_length_269_cov_1.571429_g28527_i0 PRJNA376117 28829 269 1.571429 4.22714401 Deltaproteobacteria bacterium 2026735 Bacteria Bacteria 58.5 1.39e-7   NR MCC6621559.1 2026735 g28527 i0 49.2 1.39405204460967 65 31 70.3 2 241 53 10 74 MCC6621559.1 DUF4215 domain-containing protein [Deltaproteobacteria bacterium] diamond 375 58.5 1 Bacteria   Pseudomonadati Myxococcota Myxococcia       Deltaproteobacteria bacterium
30011863 30011863 PRJNA376117_P_NODE_7631_length_484_cov_2.328467_g7330_i0 PRJNA376117 7631 484 2.328467 11.26978028 Myxococcales bacterium 2026763 Bacteria Bacteria 176 1.29e-48   NR MFT3924888.1 2026763 g7330 i0 56.5 2.00826446280992 161 69 99.8 1 2 484 424 583 MFT3924888.1 acyl-CoA dehydrogenase C-terminal domain-containing protein [Myxococcales bacterium] diamond 972 176 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales     Myxococcales bacterium
30060240 30060240 PRJNA376117_P_NODE_45351_length_226_cov_2.013072_g45049_i0 PRJNA376117 45351 226 2.013072 4.54954272 Bacteria 2 Bacteria Bacteria 45.8 0.00253   NR MBL8632617.1 2026763 g45049 i0 56.4 1.81858407079646 39 14 47.8 1 208 101 870 908 MBL8632617.1 putative metal-binding motif-containing protein [Myxococcales bacterium] diamond 411 46.2 0.991341991341991 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales     Myxococcales bacterium
30565570 30565570 PRJNA376117_P_NODE_40973_length_244_cov_0.900585_g40671_i0 PRJNA376117 40973 244 0.900585 2.1974274 Polyangiaceae 49 Bacteria Bacteria 51.2 3.93e-5   NR HRI69348.1 57 g40671 i0 41.8 2.21311475409836 55 30 67.6 1 1 165 112 164 HRI69348.1 FG-GAP-like repeat-containing protein [Polyangium sp.] diamond 540 51.2 1 Bacteria   Pseudomonadati Myxococcota   Polyangiales Polyangiaceae Polyangium Polyangium sp.
30675082 30675082 PRJNA376117_P_NODE_36533_length_249_cov_0.875000_g36231_i0 PRJNA376117 36533 249 0.875 2.17875 Byssovorax sp. 2927945 Bacteria Bacteria 43.1 0.0297   NR MFO0760369.1 2927945 g36231 i0 38.8 0.807228915662651 67 35 79.5 2 47 244 758 819 MFO0760369.1 kelch repeat-containing protein [Byssovorax sp.] diamond 201 43.1 1 Bacteria   Pseudomonadati Myxococcota   Polyangiales Polyangiaceae Byssovorax Byssovorax sp.
30738287 30738287 PRJNA376117_P_NODE_26214_length_278_cov_2.248780_g25912_i0 PRJNA376117 26214 278 2.24878 6.2516084 Sandaracinaceae bacterium 2510337 Bacteria Bacteria 110 5.24e-29   NR HEY8429780.1 2510337 g25912 i0 68.3 0.884892086330935 82 26 88.5 0 2 247 6 87 HEY8429780.1 hypothetical protein [Sandaracinaceae bacterium] diamond 246 110 1 Bacteria   Pseudomonadati Myxococcota   Polyangiales Sandaracinaceae   Sandaracinaceae bacterium
30864695 30864695 PRJNA376117_P_NODE_24134_length_285_cov_2.476415_g23832_i0 PRJNA376117 24134 285 2.476415 7.05778275 Myxococcota bacterium 2818507 Bacteria Bacteria 84.3 1.48e-16   NR MEZ4269580.1 2818507 g23832 i0 48.9 4.82105263157895 92 46 95.8 1 1 273 499 590 MEZ4269580.1 NAD-dependent malic enzyme [Myxococcota bacterium] diamond 1374 84.3 1 Bacteria   Pseudomonadati Myxococcota         Myxococcota bacterium
30864696 30864696 PRJNA376117_P_NODE_25314_length_281_cov_2.100962_g25012_i0 PRJNA376117 25314 281 2.100962 5.90370322 Paraliomyxa miuraensis 376150 Bacteria Bacteria 48.1 3.97e-4   NR WP_266214977.1 376150 g25012 i0 65 0.427046263345196 40 14 42.7 0 121 2 4 43 WP_266214977.1 RNA polymerase sigma factor [Paraliomyxa miuraensis] diamond 120 48.1 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales   Paraliomyxa Paraliomyxa miuraensis
31117266 31117266 PRJNA376117_P_NODE_30955_length_261_cov_1.638298_g30653_i0 PRJNA376117 30955 261 1.638298 4.27595778 Labilithrix sp. 1971228 Bacteria Bacteria 163 3.6e-45   NR MBX3216251.1 1971228 g30653 i0 94.2 2.95402298850575 86 5 98.9 0 259 2 291 376 MBX3216251.1 transpeptidase family protein [Labilithrix sp.] diamond 771 163 1 Bacteria   Pseudomonadati Myxococcota   Polyangiales Labilitrichaceae Labilithrix Labilithrix sp.
31134319 31134319 PRJNA376117_P_NODE_42615_length_243_cov_0.905882_g42313_i0 PRJNA376117 42615 243 0.905882 2.20129326 Bacteria 2 Bacteria Bacteria 117 1.48e-28   NR MBI2389823.1 2026735 g42313 i0 64.6 1.95061728395062 79 28 97.5 0 6 242 622 700 MBI2389823.1 hypothetical protein [Deltaproteobacteria bacterium] diamond 474 117 1 Bacteria   Pseudomonadati Myxococcota Myxococcia       Deltaproteobacteria bacterium
31148702 31148702 PRJNA376117_P_NODE_6615_length_522_cov_1.643653_g6314_i0 PRJNA376117 6615 522 1.643653 8.57986866 Deltaproteobacteria bacterium 2026735 Bacteria Bacteria 129 1.87e-33   NR TSA10146.1 2026735 g6314 i0 46.3 1.8448275862069 160 82 92 1 520 41 46 201 TSA10146.1 MAG: carbonic anhydrase [Deltaproteobacteria bacterium] diamond 963 129 1 Bacteria   Pseudomonadati Myxococcota Myxococcia       Deltaproteobacteria bacterium
31402283 31402283 PRJNA376117_P_NODE_23156_length_289_cov_1.231481_g22854_i0 PRJNA376117 23156 289 1.231481 3.55898009 Labilithrix sp. 1971228 Bacteria Bacteria 85.1 8.18e-17   NR HSO39210.1 1971228 g22854 i0 55.8 1.69204152249135 86 38 89.3 0 8 265 241 326 HSO39210.1 serine/threonine-protein kinase [Labilithrix sp.] diamond 489 85.1 1 Bacteria   Pseudomonadati Myxococcota   Polyangiales Labilitrichaceae Labilithrix Labilithrix sp.
31419157 31419157 PRJNA376117_P_NODE_39256_length_246_cov_0.890173_g38954_i0 PRJNA376117 39256 246 0.890173 2.18982558 Pseudomonadati 3379134 Bacteria Bacteria 59.3 1.16e-8   NR MDO9020713.1 2026763 g38954 i0 37.7 5.30487804878049 69 41 84.1 1 216 10 81 147 MDO9020713.1 hypothetical protein [Myxococcales bacterium] diamond 1305 59.3 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales     Myxococcales bacterium
31971421 31971421 PRJNA376117_P_NODE_3538_length_745_cov_1.903274_g3258_i0 PRJNA376117 3538 745 1.903274 14.1793913 Hyalangium rubrum 3103134 Bacteria Bacteria 47.8 0.0337   NR WP_321549060.1 3103134 g3258 i0 25.3 1.0510067114094 261 156 97.4 12 745 20 502 742 WP_321549060.1 SBBP repeat-containing protein [Hyalangium rubrum] diamond 783 47.8 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales Archangiaceae Hyalangium Hyalangium rubrum
32034783 32034783 PRJNA376117_P_NODE_23598_length_287_cov_1.514019_g23296_i0 PRJNA376117 23598 287 1.514019 4.34523453 Polyangiales bacterium 3034171 Bacteria Bacteria 79 2.54e-15   NR MEZ4394040.1 3034171 g23296 i0 53.3 0.78397212543554 75 35 78.4 0 287 63 172 246 MEZ4394040.1 glutathione S-transferase N-terminal domain-containing protein [Polyangiales bacterium] diamond 225 79 1 Bacteria   Pseudomonadati Myxococcota   Polyangiales     Polyangiales bacterium
32319879 32319879 PRJNA376117_P_NODE_13799_length_368_cov_1.267797_g13497_i0 PRJNA376117 13799 368 1.267797 4.66549296 Myxococcales bacterium 2026763 Bacteria Bacteria 78.2 6.02e-14   NR NUN12253.1 2026763 g13497 i0 39.8 1.90760869565217 113 44 91.3 4 33 368 697 786 NUN12253.1 hypothetical protein [Myxococcales bacterium] diamond 702 78.2 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales     Myxococcales bacterium
32477922 32477922 PRJNA376117_P_NODE_13159_length_375_cov_2.417219_g12857_i0 PRJNA376117 13159 375 2.417219 9.06457125 Deltaproteobacteria bacterium 2026735 Bacteria Bacteria 73.6 5.93e-14   NR TMA56305.1 2026735 g12857 i0 53.1 3.072 64 30 51.2 0 356 165 53 116 TMA56305.1 MAG: cold shock domain-containing protein [Deltaproteobacteria bacterium] diamond 1152 73.6 1 Bacteria   Pseudomonadati Myxococcota Myxococcia       Deltaproteobacteria bacterium
32855913 32855913 PRJNA376117_P_NODE_26620_length_277_cov_1.509804_g26318_i0 PRJNA376117 26620 277 1.509804 4.18215708 Polyangia bacterium 3058050 Bacteria Bacteria 90.1 7.65e-19   NR HEX2570390.1 3058050 g26318 i0 62 0.855595667870036 79 30 85.6 0 266 30 66 144 HEX2570390.1 efflux RND transporter periplasmic adaptor subunit [Polyangia bacterium] diamond 237 90.1 1 Bacteria   Pseudomonadati Myxococcota         Polyangia bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;