RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

4 rows where bioproject = "PRJNA376117" and tax_phylum = "Cercozoa"

✎ View and edit SQL

This data as json, CSV (advanced)

analysis 2

tax_superkingdom 1

tax_phylum 1

  • Cercozoa · 4 ✖

tax_clade 1

bioproject 1

  • PRJNA376117 · 4 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
399831 399831 PRJNA376117_P_NODE_24061_length_286_cov_1.084507_g23759_i0 PRJNA376117 24061 286 1.084507 3.10169002 Heteromita globosa 45107 SAR_Eukaryotes SAR_Eukaryotes 490 4.729999999999998e-134   NTclustered gi|238617605|gb|FJ973380.1| 45107 g23759 i0 97.552 100.454545454545 286 7 100 0 1 286 1601 1316 Heteromita globosa strain ATCC 50780 28S ribosomal RNA gene, partial sequence blastn 28730 490 1 Eukaryota Sar   Cercozoa   Cercomonadida Heteromitidae Heteromita Heteromita globosa
16977321 16977321 PRJNA376117_P_NODE_34754_length_250_cov_1.242938_g34452_i0 PRJNA376117 34754 250 1.242938 3.107345 Protaspis grandis 361427 SAR_Eukaryotes SAR_Eukaryotes 335 2.0099999999999996e-87   NTclustered gi|290760486|gb|GQ144689.1| 361427 g34452 i0 90.8 99.476 250 23 100 0 1 250 2099 1850 Protaspis grandis large subunit ribosomal RNA gene, partial sequence blastn 24869 335 1 Eukaryota Sar   Cercozoa Imbricatea Thaumatomonadida Thaumatomastigidae Protaspis Protaspis grandis
28590895 28590895 PRJNA376117_P_NODE_13487_length_372_cov_1.023411_g13185_i0 PRJNA376117 13487 372 1.023411 3.80708892 Cercozoa sp. M6MM 1215613 SAR_Eukaryotes SAR_Eukaryotes 127 3.44e-33   NR MES1913540.1 1215613 g13185 i0 52 3.06451612903226 125 55 97.6 2 8 370 43 166 MES1913540.1 hypothetical protein [Cercozoa sp. M6MM] diamond 1140 127 1 Eukaryota Sar   Cercozoa         Cercozoa sp. M6MM
29727154 29727154 PRJNA376117_P_NODE_37890_length_247_cov_1.327586_g37588_i0 PRJNA376117 37890 247 1.327586 3.27913742 Cercozoa sp. M6MM 1215613 SAR_Eukaryotes SAR_Eukaryotes 123 4.1e-32   NR MES1915219.1 1215613 g37588 i0 68.3 3.91093117408907 82 26 99.6 0 1 246 56 137 MES1915219.1 hypothetical protein [Cercozoa sp. M6MM] diamond 966 123 1 Eukaryota Sar   Cercozoa         Cercozoa sp. M6MM

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;