contig_metadata
7 rows where bioproject = "PRJNA376117", tax_kingdom = "Pseudomonadati" and tax_phylum = "Bdellovibrionota"
This data as json, CSV (advanced)
| Link | rowid ▼ | query | bioproject | node | length | coverage | rel_abundance | taxname_lca | taxid_lca | taxoncategory | taxoncategorysimple | bits | evalue | lowcoverage_flag | analysis_used | target | taxid | gene | allele | pident | sumperc_cov | alnlen | mismatch | qcov | gapopen | qstart | qend | tstart | tend | target_title | analysis | sumalnlen | maxbits | bits_percmax | tax_superkingdom | tax_clade | tax_kingdom | tax_phylum | tax_class | tax_order | tax_family | tax_genus | tax_species |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 13153527 | 13153527 | PRJNA376117_P_NODE_21251_length_300_cov_0.951542_g20949_i0 | PRJNA376117 | 21251 | 300 | 0.951542 | 2.854626 | Peredibacter starrii | 28202 | Bacteria | Bacteria | 538 | 1.76e-148 | NTclustered | gi|2631252187|gb|CP139487.1| | 28202 | g20949 | i0 | 99.003 | 69.5966666666667 | 301 | 2 | 100 | 1 | 1 | 300 | 511910 | 512210 | Peredibacter starrii strain A3.12 chromosome, complete genome | blastn | 20879 | 538 | 1 | Bacteria | Pseudomonadati | Bdellovibrionota | Bacteriovoracia | Bacteriovoracales | Bacteriovoracaceae | Peredibacter | Peredibacter starrii | ||
| 19525715 | 19525715 | PRJNA376117_P_NODE_26996_length_276_cov_1.221675_g26694_i0 | PRJNA376117 | 26996 | 276 | 1.221675 | 3.371823 | Bdellovibrio bacteriovorus | 959 | Bacteria | Bacteria | 431 | 2.79e-116 | NTclustered | gi|2800948966|gb|CP168973.1| | 959 | g26694 | i0 | 94.928 | 17.536231884058 | 276 | 13 | 100 | 1 | 1 | 276 | 1501803 | 1502077 | Bdellovibrio bacteriovorus strain HK2 chromosome, complete genome | blastn | 4840 | 431 | 1 | Bacteria | Pseudomonadati | Bdellovibrionota | Bdellovibrionia | Bdellovibrionales | Pseudobdellovibrionaceae | Bdellovibrio | Bdellovibrio bacteriovorus | ||
| 26916700 | 26916700 | PRJNA376117_P_NODE_44922_length_236_cov_2.503067_g44620_i0 | PRJNA376117 | 44922 | 236 | 2.503067 | 5.90723812 | Pseudobdellovibrionaceae bacterium | 2026715 | Bacteria | Bacteria | 167 | 3.2599999999999998e-52 | NR | MCK6599889.1 | 2026715 | g44620 | i0 | 98.7 | 1.95762711864407 | 77 | 1 | 97.9 | 0 | 2 | 232 | 14 | 90 | MCK6599889.1 hypothetical protein [Pseudobdellovibrionaceae bacterium] | diamond | 462 | 167 | 1 | Bacteria | Pseudomonadati | Bdellovibrionota | Bdellovibrionia | Bdellovibrionales | Pseudobdellovibrionaceae | Pseudobdellovibrionaceae bacterium | |||
| 28748620 | 28748620 | PRJNA376117_P_NODE_28587_length_270_cov_1.497462_g28285_i0 | PRJNA376117 | 28587 | 270 | 1.497462 | 4.0431474 | Micavibrio sp. | 2024841 | Bacteria | Bacteria | 114 | 2.49e-28 | NR | MDE1151994.1 | 2024841 | g28285 | i0 | 65.2 | 2.96666666666667 | 89 | 31 | 98.9 | 0 | 269 | 3 | 82 | 170 | MDE1151994.1 cation diffusion facilitator family transporter [Micavibrio sp.] | diamond | 801 | 114 | 1 | Bacteria | Pseudomonadati | Bdellovibrionota | Bdellovibrionia | Bdellovibrionales | Pseudobdellovibrionaceae | Micavibrio | Micavibrio sp. | ||
| 30060239 | 30060239 | PRJNA376117_P_NODE_40411_length_245_cov_0.895349_g40109_i0 | PRJNA376117 | 40411 | 245 | 0.895349 | 2.19360505 | Bacteria | 2 | Bacteria | Bacteria | 82.4 | 3.25e-16 | NR | MAV91103.1 | 2026715 | g40109 | i0 | 70 | 1.33469387755102 | 60 | 18 | 73.5 | 0 | 184 | 5 | 6 | 65 | MAV91103.1 aspartate aminotransferase [Pseudobdellovibrionaceae bacterium] | diamond | 327 | 82.4 | 1 | Bacteria | Pseudomonadati | Bdellovibrionota | Bdellovibrionia | Bdellovibrionales | Pseudobdellovibrionaceae | Pseudobdellovibrionaceae bacterium | |||
| 30548770 | 30548770 | PRJNA376117_P_NODE_38393_length_247_cov_0.885057_g38091_i0 | PRJNA376117 | 38393 | 247 | 0.885057 | 2.18609079 | Bacteriovoracaceae bacterium | 2081706 | Bacteria | Bacteria | 63.9 | 1.3e-9 | NR | MBT3982251.1 | 2081706 | g38091 | i0 | 38.3 | 3.89878542510121 | 81 | 50 | 98.4 | 0 | 2 | 244 | 190 | 270 | MBT3982251.1 cyclic nucleotide-binding domain-containing protein [Bacteriovoracaceae bacterium] | diamond | 963 | 63.9 | 1 | Bacteria | Pseudomonadati | Bdellovibrionota | Bacteriovoracia | Bacteriovoracales | Bacteriovoracaceae | Bacteriovoracaceae bacterium | |||
| 31781491 | 31781491 | PRJNA376117_P_NODE_33077_length_253_cov_1.705556_g32775_i0 | PRJNA376117 | 33077 | 253 | 1.705556 | 4.31505668 | Peredibacter sp. HCB2-198 | 3383025 | Bacteria | Bacteria | 86.7 | 1.9e-18 | NR | WP_408097883.1 | 3383025 | g32775 | i0 | 53.7 | 0.972332015810277 | 82 | 38 | 97.2 | 0 | 3 | 248 | 6 | 87 | WP_408097883.1 hypothetical protein [Peredibacter sp. HCB2-198] | diamond | 246 | 86.7 | 1 | Bacteria | Pseudomonadati | Bdellovibrionota | Bacteriovoracia | Bacteriovoracales | Bacteriovoracaceae | Peredibacter | Peredibacter sp. HCB2-198 |
Advanced export
JSON shape: default, array, newline-delimited
CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;