RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

9 rows where bioproject = "PRJNA376117" and tax_kingdom = "Pararnavirae"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

  • Pararnavirae · 9 ✖

bioproject 1

  • PRJNA376117 · 9 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
399777 399777 PRJNA376117_P_NODE_20741_length_303_cov_1.982609_g20439_i0 PRJNA376117 20741 303 1.982609 6.00730527 Gammaretrovirus aviretend 3428948 Viruses Viruses 560 3.79e-155   NTclustered gi|566129537|gb|KF709431.1| 11636 g20439 i0 100 74.009900990099 303 0 100 0 1 303 4696 4394 Reticuloendotheliosis virus strain GD1210, complete genome blastn 22425 560 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Gammaretrovirus Gammaretrovirus aviretend
2950761 2950761 PRJNA376117_P_NODE_5083_length_605_cov_1.148496_g4789_i0 PRJNA376117 5083 605 1.148496 6.9484008 Gammaretrovirus aviretend 3428948 Viruses Viruses 1081 0   NTclustered gi|1061489859|gb|KX278301.1| 11636 g4789 i0 99.008 121.659504132231 605 2 100 1 1 605 8353 7753 Reticuloendotheliosis virus strain IBD-C1605, complete genome blastn 73604 1081 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Gammaretrovirus Gammaretrovirus aviretend
4226937 4226937 PRJNA376117_P_NODE_2144_length_1029_cov_1.839958_g1902_i0 PRJNA376117 2144 1029 1.839958 18.93316782 Gammaretrovirus aviretend 3428948 Viruses Viruses 1901 0   NTclustered gi|71980392|gb|DQ003591.1| 11636 g1902 i0 100 75.488824101069 1029 0 100 0 1 1029 2564 1536 Reticuloendotheliosis virus strain SNV from USA, complete genome blastn 77678 1901 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Gammaretrovirus Gammaretrovirus aviretend
4227321 4227321 PRJNA376117_P_NODE_6084_length_546_cov_1.816068_g5784_i0 PRJNA376117 6084 546 1.816068 9.91573128 Gammaretrovirus aviretend 3428948 Viruses Viruses 1003 0   NTclustered gi|1230848978|gb|MF372700.1| 11636 g5784 i0 99.817 100.001831501832 546 1 100 0 1 546 989 444 Reticuloendotheliosis virus strain SDAURS10 envelope glycoprotein (env) gene, complete cds blastn 54601 1003 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Gammaretrovirus Gammaretrovirus aviretend
4901772 4901772 PRJNA376117_P_NODE_6504_length_527_cov_1.691630_g6204_i0 PRJNA376117 6504 527 1.69163 8.9148901 Gammaretrovirus 153135 Viruses Viruses 974 0   NTclustered gi|1493074649|gb|MH186051.1| 11636 g6204 i0 100 99.988614800759 527 0 100 0 1 527 1175 1701 Reticuloendotheliosis virus strain REV-Hebei2 envelope glycoprotein (env) gene, complete cds blastn 52694 974 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Gammaretrovirus Gammaretrovirus aviretend
10603387 10603387 PRJNA376117_P_NODE_10949_length_407_cov_1.607784_g10647_i0 PRJNA376117 10949 407 1.607784 6.54368088 Gammaretrovirus aviretend 3428948 Viruses Viruses 752 0   NTclustered gi|71980392|gb|DQ003591.1| 11636 g10647 i0 100 87.2334152334152 407 0 100 0 1 407 3298 2892 Reticuloendotheliosis virus strain SNV from USA, complete genome blastn 35504 752 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Gammaretrovirus Gammaretrovirus aviretend
16977287 16977287 PRJNA376117_P_NODE_32754_length_254_cov_2.209945_g32452_i0 PRJNA376117 32754 254 2.209945 5.6132603 Gammaretrovirus aviretend 3428948 Viruses Viruses 470 5.37e-128   NTclustered gi|566129537|gb|KF709431.1| 11636 g32452 i0 100 81.9685039370079 254 0 100 0 1 254 4859 5112 Reticuloendotheliosis virus strain GD1210, complete genome blastn 20820 470 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Gammaretrovirus Gammaretrovirus aviretend
24025422 24025422 PRJNA376117_P_NODE_27019_length_276_cov_1.137931_g26717_i0 PRJNA376117 27019 276 1.137931 3.14068956 Gammaretrovirus 153135 Viruses Viruses 510 3.48e-140   NTclustered gi|71980392|gb|DQ003591.1| 11636 g26717 i0 100 80.9710144927536 276 0 100 0 1 276 3804 4079 Reticuloendotheliosis virus strain SNV from USA, complete genome blastn 22348 510 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Gammaretrovirus Gammaretrovirus aviretend
24626268 24626268 PRJNA376117_P_NODE_37260_length_248_cov_0.880000_g36958_i0 PRJNA376117 37260 248 0.88 2.1824 Gammaretrovirus aviretend 3428948 Viruses Viruses 459 1.13e-124   NTclustered gi|71980392|gb|DQ003591.1| 11636 g36958 i0 100 80.9758064516129 248 0 100 0 1 248 5668 5421 Reticuloendotheliosis virus strain SNV from USA, complete genome blastn 20082 459 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Gammaretrovirus Gammaretrovirus aviretend

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;